Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1592 154 3e-32 >seq1592 Length=614636 Score = 154 bits (170), Expect = 3e-32 Identities = 523/814 (64%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGG-CTGGTACGCTCTATCCA 25570 |||||||| |||||| | ||||| | |||||| | |||| |||| | ||| | Sbjct 388196 CTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCG-ACGGACTGGGCCCGTCTCACTG 388138 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630 | |||||| | ||| || | ||| |||| ||||| || ||||| || || || | Sbjct 388137 ACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTGCCTCGGACGGCATTG 388078 Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTT 25690 | ||||||||| || |||| | || | ||| |||||| | ||||| || | Sbjct 388077 TTAACGAGAATTTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCACAGAGGCACGTTGCT 388018 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 ||||||| |||||||| ||||| || ||||||||||| ||| |||| | ||| | Sbjct 388017 TCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTCATTG 387958 Query 25751 TGACGTACATTACAGACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || |||| ||| | | ||| ||| | || |||| ||| || ||| ||| Sbjct 387957 ACACCTACA-TACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACCATG 387899 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTAC 25868 || | ||| | |||||| ||||||||| ||||| | | | | | | || | Sbjct 387898 CCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-ATCCTCGAAATCGGCCAA 387840 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| | | |||||||| || ||||| || ||||| || || || || Sbjct 387839 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 387780 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| | ||||| ||||| ||| || || ||||||||| ||| ||| |||||||| Sbjct 387779 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 387720 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA-CACGGGCC 26047 ||| ||| | | ||||| ||||| ||| | || ||||| || | || || || Sbjct 387719 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCA----CC 387664 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 | | | || || | ||| | || | ||||||| || |||||||| | Sbjct 387663 ATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAA 387604 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 ||||| ||||||| | | ||||||||| | Sbjct 387603 TCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTC 387544 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| ||| ||||| |||| |||||||| | ||||| | |||| || | | | Sbjct 387543 TCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTA 387484 Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 |||||| || || || ||| | || ||||| | || ||| |||| || |||| Sbjct 387483 AGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGA 387424 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | ||||||||||| |||| ||| | ||| || || Sbjct 387423 CAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCA 387390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928695743630720