Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1630 194 1e-43 seq1553 122 6e-22 seq1635 107 1e-17 seq3819 102 5e-16 seq1605 91.5 1e-12 >seq1630 Length=6141320 Score = 194 bits (214), Expect = 1e-43 Identities = 377/548 (69%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| |||||| | ||| | || |||| || || | Sbjct 3317003 TTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAGGTCG 3317062 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 3317063 AGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACGGACA 3317122 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| ||||| || || |||| | || || || | || | Sbjct 3317123 CGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAAACGA 3317182 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||||| || ||||| ||| | |||| || ||||| | Sbjct 3317183 TCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGAGGATTCTGCTGTGCAGTCTGACA 3317242 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || | ||| | | || | ||| || || | || || | | | Sbjct 3317243 TGAAGCACTGGCCCTTCGATGTGGTCAGCGTAGATGGCAAGCCCAAGATTGAGGTTACGT 3317302 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 3317303 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 3317360 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 |||||| | |||| |||| | || | ||| ||||| ||| || |||| || || ||| Sbjct 3317361 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACAGTGACCAATGCCGTCATCACT 3317418 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || || || ||||| || || || ||||| || | ||||| Sbjct 3317419 GTGCCAGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGATGCCGGTACCATTGCC 3317478 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| | ||||| || || || || ||||| || || | || ||||| || Sbjct 3317479 GGATTGAATGTGCTGCGTATCATCAACGAGCCCACAGCCGCTGCTATCGCCTATGGCCTG 3317538 Query 474869 GATAAGAA 474876 || ||||| Sbjct 3317539 GACAAGAA 3317546 Score = 134 bits (148), Expect = 9e-26 Identities = 369/558 (66%), Gaps = 18/558 (3%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| |||||||||||||| || || ||| || | ||||| | ||| | || ||||| || Sbjct 3055159 TGCTATTGGTATTGATTTGGGCACAACTCACTGCTGTGTGGGTGTGTTCCAGAATGGCAA 3055100 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||| ||||| |||||| | || ||| |||| |||||| | || || Sbjct 3055099 GGTCGAGATCATTGCCAACGACCAGGGTAATCGTACCACATCATCCTATGTTGCCTTCAC 3055040 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATA-----TCAAGCTGCATCTAATCCT 474502 || || | | | ||||| ||||| || || | | | | || | | || || Sbjct 3055039 GGACACGGCGCGCTTGATTGGTGATGCCGCCAAGAACCTGGTGACGGTGAACCCAAACC- 3054981 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 | | || || ||| | || | |||||||||| || ||| | ||| | ||||| Sbjct 3054980 ----AGAGGATCTTCGATTCGAAGCGTCTGATTGGTCGCAAGTTTAAGGATTCTGCTGTC 3054925 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 || |||| ||| | ||||| || | ||| | | ||| | || || || | || Sbjct 3054924 CAGGCTGACATGAAGTACTGGCCCTTCGATGTGGTCAGTGTAGACGGCAAGCCCAAGATT 3054865 Query 474623 GAAGCAA--TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 || | | |||| | | | | || | || | ||| || || | || ||| | |||| Sbjct 3054864 GAGGTTACGTACAAGGACGAG-AAGAAGACCTTCTTCGCC-GAGGAGATCTCTGCCATGG 3054807 Query 474681 TTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGC 474738 | || |||||||||| | |||| |||| | | ||| ||||| || || | || Sbjct 3054806 TGTTGACCAAAATGAAGGAGACCGCCGAG--GAGTACCTGGGCAAGACGGTGACCAAAGC 3054749 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || |||| ||||| | || || || || || ||||| || || || ||||| || Sbjct 3054748 TGTCATCTCTGTGCCAGCCCACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGG 3054689 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | || || ||| | || || | ||||| || || || || || || || ||| | || Sbjct 3054688 TACCATCGCCGGTTTGAAAGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCAATCGC 3054629 Query 474859 TTATGGTCTTGATAAGAA 474876 ||||| || || ||||| Sbjct 3054628 CTATGGCCTGGACAAGAA 3054611 >seq1553 Length=238302 Score = 122 bits (134), Expect = 6e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 817092 TTTTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGAT 817151 |||| | |||||||| || || ||||| || ||| | |||||| |||| ||||| | | Sbjct 47583 TTTTGGTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGCCACTTACGCT 47642 Query 817152 CTACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAA 817211 ||||||| ||||| ||||| |||| | || ||||||| | || ||| Sbjct 47643 CTACAATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTC 47702 Query 817212 GAATAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 | ||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 47703 GTATAAATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGCA 47752 >seq1635 Length=10282868 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || ||||| | ||| | || || || || |||||||||| || || Sbjct 1470203 ACGAAGCCGAAGTACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGT 1470262 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | |||||| | |||||| ||||| || || | ||| |||||||| ||||||||||| Sbjct 1470263 TCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCC 1470322 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||| || ||||| ||||||| ||| || ||||| | || ||||| Sbjct 1470323 TTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAG 1470382 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || ||||| || || || || Sbjct 1470383 AGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTG 1470421 >seq3819 Length=1025 Score = 102 bits (112), Expect = 5e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | |||||| || ||||| ||||| || || ||||| || || || || || Sbjct 368 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 309 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 ||||| |||||||| || ||||| ||| || ||||| || |||| || Sbjct 308 ATTCCCTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCACC 249 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| || || |||||||| ||||||||||| Sbjct 248 TCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTG 205 >seq1605 Length=935084 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || ||||| || || ||||| || || || ||||| ||| ||| Sbjct 399156 ACTGTGCCCGCCTACTTCAATGACTCGCAGCGTCAGGCCACCAAGGATGCCGGACAGATT 399215 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||||||||| ||| | || || || || |||||||| || || || || || Sbjct 399216 GCCGGTCTTAATGTTTTGCGTGTAATCAACGAGCCCACAGCAGCGGCCCTGGCCTACGGC 399275 Query 474866 CTTGATAAGA 474875 | ||||||| Sbjct 399276 ATGGATAAGA 399285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267628515890024