Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1635 181 5e-41 >seq1635 Length=10282868 Score = 181 bits (200), Expect = 5e-41 Identities = 319/459 (69%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973 ||||| |||||| | ||| || | ||| |||||||| | || ||||| | ||| | Sbjct 1116482 CATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAGAGCGTAAAAAAGATCAC 1116423 Query 25974 TCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCT 26032 ||||| ||||||||||||| ||| ||||||| || ||||| || ||||||| |||| Sbjct 1116422 GTGCTCTGTTTTCTTCTTTTCCAGTGTTTCTTTTG-AGGTCTAAAAACTCAAAAACATCT 1116364 Query 26033 GAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCT 26092 || ||||| || |||||||| |||||||| ||| ||||||||| || || ||||| Sbjct 1116363 GAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCA 1116304 Query 26093 ACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCG 26152 || |||| ||| | ||| |||||| | | |||||||||||||||| | || ||| Sbjct 1116303 ACATATCGTGCCACATTATTAAAAACTCTTAGCATTGGAACTAATCCATTCGACGTACCG 1116244 Query 26153 TTTGTGCTATGAATCTTGGAT---CCTGTCGATCTAATATCGTGAGCATGAATACCGATT 26209 || || | | || ||||| ||| | | | ||| ||| ||| || || ||| Sbjct 1116243 TTCGTTCCA--CAT-ATGGATGTGCCTTTAGCACGAATGCAATGAACATTAAGTCCAATT 1116187 Query 26210 CCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATG 26269 ||||| || | || ||||| |||||| | | ||||| | ||||| |||| || Sbjct 1116186 CCACCTGCTGACTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATT 1116127 Query 26270 CTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAA 26329 ||| |||||| || | |||||| || || ||||| | || ||||| | | | Sbjct 1116126 GAATCCGAATTCATTGTCAAAAGAAAACATGAGGACAATTGAGGTCGATTTGTTGCAGCA 1116067 Query 26330 TTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCA 26368 ||| | || || | ||||| ||| |||||| |||| Sbjct 1116066 GCAAAAAGCGTTGGCGAGGCATGCGTAAAATATCGTTCA 1116028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253000408570850