Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1635 149 1e-30 seq1604 87.8 4e-12 >seq1635 Length=10282868 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||| || | ||||||||| || || | ||| || || ||||||||||| Sbjct 1470198 CCACCACGAAGCCGAAGTACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGAC 1470257 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| |||||||| || ||||| ||||| || | ||||||||| || || Sbjct 1470258 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 1470317 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| || || || || ||| ||||| || | ||| |||| ||| || Sbjct 1470318 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 1470377 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || || |||| || || | ||| |||||||| Sbjct 1470378 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 1470424 >seq1604 Length=992631 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| | ||| | ||| || ||| || || || Sbjct 939706 ATACCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCC 939647 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||| || || || ||||| | | ||| || || || Sbjct 939646 GAAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGG 939587 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || || || || || || | || || | || Sbjct 939586 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCC 939527 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || |||||||| ||||| || ||||| | ||| ||||||||||| Sbjct 939526 ACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 939474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984318065961300