Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1635 147 6e-30 seq1611 140 1e-27 seq1636 105 2e-17 >seq1635 Length=10282868 Score = 147 bits (162), Expect = 6e-30 Identities = 784/1229 (64%), Gaps = 39/1229 (3%) Strand=Plus/Minus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTA------GC 155365 |||||||||| ||||||||||||| ||||| ||||| ||| |||| | | Sbjct 1117069 TTCCAGAGCCCCAAAATAAATTGTTTCAAA----TATTTGTTG---GTTTAAAAGACCGG 1117017 Query 155366 CTCCTCAGATGTAAATGCGATATC-CATCTTGAAA--AATGTGTCGGCTAAACCCTGAAC 155422 || || | | | | | || | | ||| | ||| || | ||| |||||||| ||||| Sbjct 1117016 CTTCTTCGCTTTCATAGGGAAAACGCAT--TAAAATTAAAGCGTCAGCTAAACCTTGAAC 1116959 Query 155423 TCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAA 155481 || ||||||| ||| |||||||| ||||| | | |||| ||||| | ||| ||| Sbjct 1116958 ACCTATACCGATTGGACGATGCCTTAAATTGGACTT-CTTGGCTTCTGGCAAGGGGTAAT 1116900 Query 155482 AATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATT 155541 | || | || ||||| || || | |||| | | | |||||||| ||| ||||| Sbjct 1116899 AGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATT 1116840 Query 155542 TCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGAT 155601 | | ||| | ||||| || |||| ||||| || | || || || | || Sbjct 1116839 TTTTGAAATCATACGTTTTTTCTGGTGTTACGAACATGTTCAGTGCTATGGAAGCTAAAT 1116780 Query 155602 TACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAGCACAGGTTAGA 155659 | || || || ||| | || |||| || || ||||| || || | ||| Sbjct 1116779 TGCAGACAGCGACCTCATCAG-GT-GCTGAGTACTCGACAATTTCTGTACATAAATTACT 1116722 Query 155660 ACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAG 155719 | || |||||||| | ||| | || || || || ||||| | |||||| | || Sbjct 1116721 GCATTTAATGGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAG 1116662 Query 155720 AATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGC 155779 ||||||||| | || ||||||| || | || | ||| | ||| | | |||| Sbjct 1116661 CATGTATGGGTTACCAGTCTCCACTTGCGATTCTATAATAGCAAACCATAAAGCCTGGGC 1116602 Query 155780 ATTAATTTGCTTG-TTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAAT 155838 | | | | | | || | ||||| ||||||||| | ||| ||| | | | Sbjct 1116601 TTCCACT-GTTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGCTCTTCAAATT 1116543 Query 155839 CCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTT 155898 || || || ||| || ||||| || |||| || || | || |||||| ||| Sbjct 1116542 TTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAACGACCAGCTTT 1116483 Query 155899 TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCC 155958 ||| | ||||| | ||| || | |||| ||| | ||| || ||||| || | Sbjct 1116482 CATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAGAGCGTAAAAAAGATCAC 1116423 Query 155959 TTGC-CT-TTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATC 156016 ||| || || || || || | ||| ||||| | || ||||| || || || ||| Sbjct 1116422 GTGCTCTGTTTTCTTCTTTTC-CAGTGTTTCTTTTG-AGGTCTAAAAACTCAAAAACATC 1116365 Query 156017 AGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACC---CTGATC 156073 | ||| ||||| | ||| |||||||| |||| || || ||||| |||||| Sbjct 1116364 TGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATC 1116305 Query 156074 TACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA-TAATACCATTGGAAGTGC 156132 ||||| || || ||||| || || | |||||| |||| |||| ||||| || || | Sbjct 1116304 AACATATCGTGCCACATTATTAAAAACTCTTAGCATTGGAACTAAT-CCATTCGACGTAC 1116246 Query 156133 CATTGGTTCCGCGAAT--ATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAAT 156190 | || ||||| | || ||| | || | |||| ||||| || |||||||| Sbjct 1116245 CGTTCGTTCCACATATGGATGTG--CCTTTAGCACGAATGCAATGAACATTAAGTCCAAT 1116188 Query 156191 ACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAAT 156250 ||||||| | || ||||| | || |||| | || | || |||||||||||||| Sbjct 1116187 TCCACCTGCTGACTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAAT 1116128 Query 156251 AGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGC 156310 ||||| | ||||| | ||| | || || ||||||||||| |||| |||| Sbjct 1116127 TGAATCCGAATTCATTGTCAAAAGAAAACATGAGGACAATTGAGGTCGATTTGTTGCAGC 1116068 Query 156311 GTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || || || || | ||||| ||||||| | ||||| | ||| || || Sbjct 1116067 AGCAAAAAGCGTTGGCGAGGCATGCGTAAAATATCGTTCAGACAGTAGGTTGTAAGTTTC 1116008 Query 156371 CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTG 156430 | | |||| || || ||||||| | || ||| | |||| ||| || || Sbjct 1116007 CACTGCCGCATCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTG 1115948 Query 156431 AGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAA 156490 ||||| ||| |||| |||| || || || || | || || || || ||||| Sbjct 1115947 TGGACGTTCTGCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAA 1115888 Query 156491 CCCGAAATAATCAAACAGAAAATCACGGT 156519 || ||||| | | | |||||| |||| Sbjct 1115887 TCCAAAATAGTTATAACCAAAATCTCGGT 1115859 >seq1611 Length=1448063 Score = 140 bits (154), Expect = 1e-27 Identities = 193/266 (73%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||| ||||| || || || ||| | ||||||||| || ||| Sbjct 978552 TCCATAGCCTTGATCAGACGTCGCTGGATGTAGCCGGTTTCGGCTGTTTTTACCGCCGTA 978611 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| ||||||||||||||| | | ||| | || ||| || || Sbjct 978612 TCGATGAGACCCTCACGACCGCCCATAGCATGGAAGTAGAACTC-TGAGGGCGTCAGACC 978670 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | ||| |||| || || || |||| |||||| || ||| |||| | || Sbjct 978671 GGCTAGATACGAGTTCTCCACAAAGCCGCGCGACTCGGGACCATAATCGTCCTTGATGAA 978730 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || |||||||| | || | ||||| ||||||||||| || || || ||||| || Sbjct 978731 ATGCGGCAGGGTACGCTTACGGAATCCGTACGGGATACGCTTGCCCTCCACATTCTGTTG 978790 Query 302814 TCCCAGGCACGAAATCATCTGCGAAA 302839 ||||| ||| | ||| | ||| |||| Sbjct 978791 TCCCACGCAAGCAATGACCTG-GAAA 978815 >seq1636 Length=11822988 Score = 105 bits (116), Expect = 2e-17 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||| || |||||||||||||||||||| ||||| |||||| | Sbjct 7016649 CGATTGTCATACGAGAGGGGATGGCATGGGGATTGATGATGATATCGGGGGCCAGTCCCT 7016590 Query 251903 CAGCAG-TGAAGGGCATATCCTTTTCCT--CAATAATGTTTCCAATA-GTTCCCTTTTGT 251958 | |||| |||||||||| || ||||| | ||| || ||| | | |||||||| ||| Sbjct 7016589 C-GCAGGTGAAGGGCATGTC---TTCCTGCCGATACTGGATCCCACACGTTCCCTTCTGT 7016534 Query 251959 CCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACC 252018 |||||||| || ||||| || || || || ||| || || | |||| | Sbjct 7016533 CCGTGACGGGAGGCAAACTTGTCGCCGATCTGTGGGATGCGCACGGAGCGCACTCGAATC 7016474 Query 252019 TTACAGAAGTTGTAACCATCACCGTTG 252045 || ||||| ||||| || || | |||| Sbjct 7016473 TTGCAGAACTTGTAGCCCTCGCTGTTG 7016447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471575505322406