Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1596 161 1e-33 seq1612 145 9e-29 seq1610 138 1e-26 seq1267 138 1e-26 seq11669 134 2e-25 seq1617 113 6e-19 seq1592 102 1e-15 seq1540 91.5 2e-12 >seq1596 Length=810552 Score = 161 bits (178), Expect = 1e-33 Identities = 246/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||||||| ||| ||| ||||| || |||| | || Sbjct 493905 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTGCTCGG 493846 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| ||||| || || || || ||| ||||||||||| |||| || Sbjct 493845 AGACAGCTACAAGGAGGCAGTGCTGGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 493786 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| ||| || || || || Sbjct 493785 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACGCTACCCAAGGGTCGT 493728 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | ||||| |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 493727 CACAAGATCGTTATCCTGGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 493668 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||||| ||| ||||||||| ||||| || ||||| |||||||| Sbjct 493667 CGTCGCACCATGGAAATCTACAGCAACACGACTCGCTTCGCACTGGCCTGCAACACCAGC 493608 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | |||||||| | | || ||||||||||| |||||||| Sbjct 493607 GAGAAGATCATCGAGCCGATACAGTCGCGCTGCGCCATGCTGCGCTT 493561 >seq1612 Length=1556852 Score = 145 bits (160), Expect = 9e-29 Identities = 335/493 (68%), Gaps = 14/493 (3%) Strand=Plus/Minus Query 1852163 AAGGCAAATATCTTGCGCTGGTCG-CGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 1852221 |||| || ||||||||||| ||| ||||| |||||||||||||| || | |||| | Sbjct 959959 AAGGTGAAGATCTTGCGCTGATCGACGCCC-CCAAACTGGGCGTCCACCTTCAGGTATTC 959901 Query 1852222 CTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 |||||| |||||||||| || ||||||| | ||| ||||||| || Sbjct 959900 CTCGTCCAGGGCCTGCAGTCCTGGATAGAGCAGGCCAGACAGCAGCGGGTACTCTACCTG 959841 Query 1852282 CTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCGAG 1852338 || || |||| ||| | ||||| | || ||||| | ||| ||| || | || Sbjct 959840 TTTAACGACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGCGTGACCAC---CGAGGATAG 959784 Query 1852339 TCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAAAC 1852396 ||| | ||| || | ||| | || | || |||||| ||| |||| |||||| Sbjct 959783 CTTGTATACGTCCAGAGTGTA--CTCCTTGGACAGCTGGTAGTCGCTGCCCTTGACAAAC 959726 Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTA 1852455 | || ||||||| ||||||||| ||| |||||||||||||| | |||||| Sbjct 959725 TTCAGCTTCTCCAGCGGAACGCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTA 959667 Query 1852456 CCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTG 1852515 | || || | || | ||| ||| |||| || |||||| || | |||||| Sbjct 959666 GTACTGGGTGCGCAGCTCCAGCAGCGACCAGGGCGCTTTCATGTTGTCCAGATAGGCGTG 959607 Query 1852516 CACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAA 1852575 | |||||||| || || | ||| |||||||||| || |||||||| | || | Sbjct 959606 GAGATCGGCAAACAGAATGGTTACCTCGCAGCCGGCCTTTAGGAAGTCGGCAATCTTCGA 959547 Query 1852576 GATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGAT 1852635 || |||||||||||| | | || || || ||||||| |||||| ||||| || || | Sbjct 959546 CATCGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTTCCCCAGTAGATCTT 959487 Query 1852636 CAGGGGGCGCTCG 1852648 ||| ||||||| Sbjct 959486 TAGGTCGCGCTCG 959474 >seq1610 Length=1349181 Score = 138 bits (152), Expect = 1e-26 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 10621 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 10562 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||| ||||| || |||||| | ||||||| || Sbjct 10561 CTCTTCGAGCTAATCCTGGCCGCCAATTACCTAGATATCAAGGGTTTGCTCGAGCTGACT 10502 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| |||||||| ||||| ||| | || |||||||| || ||||| ||| Sbjct 10501 TGCAAGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 10442 Query 1592288 AACATCAAG 1592296 ||||| ||| Sbjct 10441 AACATTAAG 10433 Score = 138 bits (152), Expect = 1e-26 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 41771 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 41712 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||| ||||| || |||||| | ||||||| || Sbjct 41711 CTCTTCGAGCTAATCCTGGCCGCCAATTACCTAGATATCAAGGGTTTGCTCGAGCTGACT 41652 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| |||||||| ||||| ||| | || |||||||| || ||||| ||| Sbjct 41651 TGCAAGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 41592 Query 1592288 AACATCAAG 1592296 ||||| ||| Sbjct 41591 AACATTAAG 41583 >seq1267 Length=22135 Score = 138 bits (152), Expect = 1e-26 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 18121 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 18062 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||| ||||| || |||||| | ||||||| || Sbjct 18061 CTCTTCGAGCTAATCCTGGCCGCCAATTACCTAGATATCAAGGGTTTGCTCGAGCTGACT 18002 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| |||||||| ||||| ||| | || |||||||| || ||||| ||| Sbjct 18001 TGCAAGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 17942 Query 1592288 AACATCAAG 1592296 ||||| ||| Sbjct 17941 AACATTAAG 17933 >seq11669 Length=3254 Score = 134 bits (148), Expect = 2e-25 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 341 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 400 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||| ||||| || |||||| | ||||||| || Sbjct 401 CTCTTCGAGCTAATCCTGGCCGCCAATTACCTAGATATCAAGGGTTTGCTCGAGCTGACT 460 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||| | | ||||| |||||||| ||||| ||| | || |||||||| || ||||| ||| Sbjct 461 TGCAGGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 520 Query 1592288 AACATCAAG 1592296 ||||| ||| Sbjct 521 AACATTAAG 529 >seq1617 Length=1869541 Score = 113 bits (124), Expect = 6e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 1224674 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 1224615 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| ||| | || | |||||||| || || || |||||| | ||||||| | Sbjct 1224614 ACTCTTCGAGCTAATGCAGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAGGTGTC 1224555 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 |||||| | |||||||| ||||| | | ||||| | || ||||| || |||||||| || Sbjct 1224554 TTGCAAGACCGTGGCCAATATGATGATGTGCAAGACTCCAGAGGAAATACGCAAGACTTT 1224495 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 1224494 CAACATCAAG 1224485 Score = 109 bits (120), Expect = 7e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 1226953 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 1226894 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| ||| | || || |||||||| || || || |||||| | ||| ||| | Sbjct 1226893 ACTCTTCGAGCTAATGCTGGCCGCCAATTATCTGGATATCAAGGGTTTGCACGAGGTGTC 1226834 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 |||||| | |||||||| ||||| ||||| || || ||||| || |||||||| || Sbjct 1226833 TTGCAAGACCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTT 1226774 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 1226773 CAACATCAAG 1226764 >seq1592 Length=614636 Score = 102 bits (112), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||| |||| | ||| || ||||| ||||| || || |||||||||| |||||| Sbjct 387392 GTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCAT 387451 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| || || || |||||| ||| | |||||| | | ||||| || Sbjct 387452 GAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCG 387511 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||| || ||||||||||||||| ||||||| | ||||||||| || | || Sbjct 387512 ATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGAC 387571 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | || | | ||||| | |||||| || || || || |||||||| Sbjct 387572 GGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT 387627 Score = 100 bits (110), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||||| |||||| |||| || ||||||||||| || ||||| Sbjct 387698 ACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 387757 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||||||||| | | || ||||| || ||||| || || ||||| ||||| Sbjct 387758 CTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAA 387817 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323 | | || | |||||||||||| || Sbjct 387818 GGCAATAATACGCTCGGCAAAGTTG 387842 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||||| ||||| |||||||||||||| ||| | |||||| | || Sbjct 387981 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 388040 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| | || || || ||| |||||| || |||||||| ||| ||||| Sbjct 388041 ACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 388100 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GGAC 869811 || ||||| || || |||||||| |||||||| ||| |||| |||||| | | Sbjct 388101 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 388160 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | || | || |||||||| || ||||||||| ||||| || |||| Sbjct 388161 GCGTCCTTCGAT-AGATCCACCTCTTCCACGGTCCAGAAGGAGGCTTCCGCCT 388212 >seq1540 Length=202244 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||||||||||||| || ||||||| ||||| | | || || ||| ||| ||| Sbjct 144691 CACCGACGACATCATTCCCTGGGACATCGAGTTCCTCAAGGTGGACCAGGGCACTATCTA 144632 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC-A 1592231 ||| | || || |||||||| || | ||||| ||| | || | | || | ||| | Sbjct 144631 CGAGCTAATGCTGGCCGCCAATTATATGGACATAAAGGGTTTGTTGCAACT-GATTGCCA 144573 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || ||||||||||||||||||||||| | |||||| |||| || ||||||| ||| Sbjct 144572 AGCACCTGGCCAACATGATCAAGGGCAAGACTCCCGAGCAGATACGTCAGACCTTCCACA 144513 Query 1592292 TC 1592293 || Sbjct 144512 TC 144511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106085653599646