Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1630 176 3e-38 seq1553 120 2e-21 >seq1630 Length=6141320 Score = 176 bits (194), Expect = 3e-38 Identities = 563/869 (65%), Gaps = 12/869 (1%) Strand=Plus/Minus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| | || ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 3317860 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 3317801 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 282132 ||| || || || || || || || | || | || | | |||| |||||| | Sbjct 3317800 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCACGCTTGTTGCTGGT-- 3317743 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 || || | || | || | |||||| || | ||| | || || ||||| || Sbjct 3317742 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 3317686 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 || ||||| ||||| || | | |||| || | ||||| | | || | ||| | || Sbjct 3317685 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 3317626 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || || | |||| || | ||||| ||| || ||||||| ||| |||||||| || Sbjct 3317625 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 3317566 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 || || | || || || || ||||| || | |||||| || || || || Sbjct 3317565 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCTGTGGGCTC 3317506 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || || || | || ||||| | || ||||| | || ||||| || || || || | Sbjct 3317505 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 3317446 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 || || ||||| || || || || ||||| || ||||||| || ||| || || | Sbjct 3317445 CTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACTGTCTTGCCCAG 3317386 Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552 || || || || | |||||||| | || | ||| || || || | || || || Sbjct 3317385 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GA 3317327 Query 282553 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 | | | ||| |||| | || | || |||| | || || | | || | | Sbjct 3317326 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACGCTGA 3317267 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 || | || ||||| | ||||| || || || ||| || | ||| | | || Sbjct 3317266 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 3317207 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 |||| | || || ||||| || || || | |||||| || | || | |||| |||| Sbjct 3317206 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 3317147 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 | ||||| ||||||| | | || || || || || | |||||| ||||| || || |||| Sbjct 3317146 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 3317087 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 |||| || || || ||||| || || || || |||| || | ||||| |||||| Sbjct 3317086 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 3317027 Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880 | ||||| || ||||||||||||| |||| Sbjct 3317026 AGGTTGTGCCCAAATCAATACCAACAGCA 3316998 Score = 102 bits (112), Expect = 6e-16 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||| || ||||| || | || ||| || ||||| | | |||||| | Sbjct 3054899 AAGGGCCAGTACTTCATGTCAGCCTGGACAGCAGAATCCTTAAACTTGCGACCAATCAGA 3054958 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 || || | ||| || || | | | |||| || || | | | | ||||| ||||| Sbjct 3054959 CGCTTCGAATCGAAGATCCTCTGGTTTGGGTTCACCGTCACCAGGTTCTTGGCGGCATCA 3055018 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 ||||||| | | || || || || | |||||| |||| || || |||||||| || Sbjct 3055019 CCAATCAAGCGCGCCGTGTCCGTGAAGGCAACATAGGATGATGTGGTACGATTACCCTGG 3055078 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 || || ||||| || || || || ||||| || | ||||| ||||| | |||||| Sbjct 3055079 TCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACACACCCACACAGCAGTGAGTTGTG 3055138 Query 282860 CCTAAATCAATACCAATAGCA 282880 || |||||||||||||||||| Sbjct 3055139 CCCAAATCAATACCAATAGCA 3055159 >seq1553 Length=238302 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 || |||| |||||| || ||||| || || | |||||| |||| || ||| | || || Sbjct 47588 GTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGCCACTTACGCTCTACA 47647 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 |||||||| ||||| |||| | || | ||| | | |||||| || |||||| Sbjct 47648 ATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTCGTATA 47707 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||||| | |||||||||||||| |||||||||||||||||||| Sbjct 47708 AATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 47751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740000108453388