Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1635 239 1e-57 >seq1635 Length=10282868 Score = 239 bits (264), Expect = 1e-57 Identities = 481/707 (68%), Gaps = 11/707 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||| || || || || || ||| | ||| ||||| | ||||| | || Sbjct 1115877 ACTATTTTGGATTTAAGACGCTCGAGCGTTCCTATCTACTTAAGATAAATGGGAAAATTG 1115936 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||||||| ||||||||| | | || || || |||||||||||||| | |||||| Sbjct 1115937 CAGAACGTCCACAACACATGCTGATGCGCGTCGCTCTTGGTATTCATGGAGACGATATTG 1115996 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 | || | | ||| ||| | || | | || | || ||||| | || | Sbjct 1115997 ATGCGGCAGTGGAAACTTACAACCTACTGTCTGAACGATATTTTACGCATGCCTCGCCAA 1116056 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || ||| || | ||| ||| || |||||| | || || |||||| | ||| | Sbjct 1116057 CGCTTTTTGCTGCTGCAACAAATCGACCTCAATTGTCCTCATGTTTTCTTTTGACAATGA 1116116 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | ||||| ||||||||||||| | | | || || || ||| || ||||| || Sbjct 1116117 ATTCGGATTCAATTGAAGGTATTTTTAAATCAGTTGAACAATGTGCACTGATTTCCAAGT 1116176 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAA--ATATC-G 110658 | || |||||||| || | |||||| ||||| | ||||| || |||| | Sbjct 1116177 CAGCAGGTGGAATTGGACTTAATGTTCATTGCATTCGTGCTAAAGGCACATCCATATGTG 1116236 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 ||| ||| ||| | || | |||| | ||||||||| ||||||| || || | | Sbjct 1116237 GAAC---GAACGGTACGTCGAATGGATTAGTTCCAATGCTAAGAGTTTTTAATAATGTGG 1116293 Query 110719 CAAAATATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 || |||||| |||| |||||| || ||| ||| | |||||||| ||| | || | Sbjct 1116294 CACGATATGTTGATCAGGGAGGTGGAAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGC 1116353 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAA 110834 | |||||||||||| | ||||| || |||| || || || || || ||| |||||| Sbjct 1116354 CCTGGCATTCAGATGTTTTTGAGTTTTTAG-ACCTCAAAAGAAACACTGGAAAAGAAGAA 1116412 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | |||||||||||| | ||||| || | |||||| | ||| | ||||||||||||||| Sbjct 1116413 AACAGAGCACGTGATCTTTTTTACGCTCTATGGATTCCTGATCTTTTCATGAAACGTGTT 1116472 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 | | ||||| | ||||| | |||||||| ||| | |||||| || ||||| Sbjct 1116473 GAGGCAAATGAAAGCTGGTCGTTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTT 1116532 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | || || | |||||||| || || | |||||||| ||||||| Sbjct 1116533 TGGGGCGAAAAATTTGAAGAGCTCTATGTCAAATATGAGCAAGAAGG 1116579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186617584871318