Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1604 113 3e-20 seq1635 100 2e-16 seq1619 98.7 7e-16 seq1628 82.4 5e-11 >seq1604 Length=992631 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| ||||| ||| || || |||||||| || || Sbjct 939704 ACCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 939645 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||| || ||||| || || | ||||||||| ||| | || Sbjct 939644 AAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 939585 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| | | ||| ||||||| || |||| Sbjct 939584 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTCCA 939526 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 939525 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 939477 >seq1635 Length=10282868 Score = 100 bits (110), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||| ||||| || ||||| || | || |||||||| || || || || Sbjct 1470233 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 1470292 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||||||||| |||||| | || | ||||||||||| || || | || |||| Sbjct 1470293 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTT-GGCTTTGACAT 1470351 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| || | ||| || |||| || || || || || |||| || |||| Sbjct 1470352 TTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTA 1470411 Query 33737 CAAAGATCTGCATAGTT 33753 ||||||||||||| ||| Sbjct 1470412 CAAAGATCTGCATGGTT 1470428 >seq1619 Length=1930428 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| ||||| |||||||||||||| Sbjct 108532 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGAC 108473 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 108472 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108413 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 108412 ATGCCCTCCTTGTC 108399 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 106495 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 106436 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 106435 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 106376 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 106375 ATGCCCTCCTTGTC 106362 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||| || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 106726 CCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAT 106667 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 106666 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 106607 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 106606 ATGCCCTCCTTGTC 106593 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| ||||| |||||||||||||| Sbjct 108076 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGAC 108017 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| || | || || ||||| || |||||||||||||||||| | || Sbjct 108016 AAGGTACGTCCGTCCTCTAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 107957 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 107956 ATGCCCTCCTTGTC 107943 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||| || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 108760 CCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAT 108701 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 108700 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108641 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 108640 ATGCCCTCCTTGTC 108627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || | |||| || || || |||||||||||||| | || ||| | Sbjct 106943 ACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 106884 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||||||||||||||||| | || | || || || Sbjct 106883 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 106824 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || | | |||| || | |||||| | || || || | |||| Sbjct 106823 GTCCTGAATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGA 106765 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || || ||||||||||| Sbjct 106764 TGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 106728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || | |||| || || || |||||||||||||| | || ||| | Sbjct 108977 ACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 108918 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||||||||||||||||| | || | || || || Sbjct 108917 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 108858 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || | | |||| || | |||||| | || || || | |||| Sbjct 108857 GTCCTGAATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGA 108799 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || || ||||||||||| Sbjct 108798 TGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 108762 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| ||||| |||||||| ||||| Sbjct 106267 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 106208 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 | || ||| |||| |||| || || ||||| || |||||||||||||||||| Sbjct 106207 AACGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCT 106154 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | |||||| | |||||| || || || ||| || || |||||||| ||||| Sbjct 108304 CCTCCGCGCAAACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 108245 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 108244 AACGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108185 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 108184 ATGCCCTCCTTGTC 108171 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT-GTGCGTTCGTCGT 33598 ||||||||| | ||| ||| || || |||||||||||||| | || ||| |||| | Sbjct 105552 CACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAAGTACGTCCGTCCT 105493 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||| || || ||||| || |||||||||||||||||| | || | || || ||||| Sbjct 105492 CCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 105435 >seq1628 Length=3966273 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||||| || || || ||| || || |||||||| ||||| Sbjct 3671140 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 3671199 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || ||||| || |||| ||||||||||||| | || Sbjct 3671200 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3671259 Query 33642 CACACCTTCTTTGTC 33656 | || || ||||| Sbjct 3671260 AATGCCCTCCTTGTC 3671274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328652569944960