Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1628 98.7 2e-15 seq1619 87.8 4e-12 seq1604 87.8 4e-12 >seq1628 Length=3966273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| || || |||||||| |||| Sbjct 3671352 AAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 3671293 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 3671292 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 3671233 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 3671232 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 3671173 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 3671172 ACCCTGCAC 3671164 >seq1619 Length=1930428 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || || || || ||||| |||| Sbjct 106743 AAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGACACCATCGAGAAT 106802 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| || || || | | |||||| Sbjct 106803 GTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTC 106862 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | |||||| ||||||||||| ||||||| || || Sbjct 106863 GCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAATCC 106922 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || ||| | ||||| Sbjct 106923 ACTTTGCACTTGGTATTGCGTCTTCG 106948 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || || || || ||||| |||| Sbjct 108777 AAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGACACCATCGAGAAT 108836 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| || || || | | |||||| Sbjct 108837 GTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTC 108896 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | |||||| ||||||||||| ||||||| || || Sbjct 108897 GCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAATCC 108956 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || ||| | ||||| Sbjct 108957 ACTTTGCACTTGGTATTGCGTCTTCG 108982 >seq1604 Length=992631 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || |||||||| ||||| |||| ||||| Sbjct 939474 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAG 939530 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || ||| ||||| || || || || ||||| || Sbjct 939531 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCA 939590 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| ||||| |||| ||||| | ||| | | || Sbjct 939591 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGAC 939650 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| ||||||| ||||| ||||| || Sbjct 939651 TACAACATCCAGAAGGAGTCGACTCTGCA 939679 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 939720 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 939779 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 939780 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 939839 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 939840 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 939899 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 939900 ACTCTGCA 939907 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 940176 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 940235 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 940236 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGTCTCATCTTC 940295 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 940296 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 940355 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 940356 ACTCTGCA 940363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181626405989798