Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1635 219 4e-52 seq1616 120 3e-22 seq1619 89.7 5e-13 seq1628 84.2 2e-11 seq3819 82.4 7e-11 >seq1635 Length=10282868 Score = 219 bits (242), Expect = 4e-52 Identities = 839/1301 (64%), Gaps = 25/1301 (2%) Strand=Plus/Minus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 ||||| |||||| || || || |||||||||||||| ||||||||||| || ||||| Sbjct 1117701 ACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCCGGTTTTT 1117642 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 || ||| | ||| ||| | || || || |||| | |||| | ||||| || Sbjct 1117641 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCT 1117582 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 ||| || |||||| || || |||||||| || || || | || || ||||| | | Sbjct 1117581 ACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATTTTA 1117522 Query 146731 ATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGA 146790 || || |||| |||||||| | ||||| || || | ||| | | ||| Sbjct 1117521 ATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGGGGA 1117462 Query 146791 ATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGC 146850 ||| |||||| | |||||| |||||| || | || || | ||| || || Sbjct 1117461 ATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCA 1117402 Query 146851 GTGTAAAGGTTTAGTTTAATGAGGTCA-TCAATTAAATACTGATTGACCACTTGAAACTC 146909 | | || | || | | || ||||| |||| ||||||||||||||||| || Sbjct 1117401 TCCCATAAGTCCAATTCTGTTAAATCCCTCAAT-AAATGATGATTGACCACTTGAAATTC 1117343 Query 146910 GCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATT 146969 || | | || ||||| ||| | ||| | || | || || || || || ||||| Sbjct 1117342 ACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGTTATT 1117283 Query 146970 GCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAG 147029 || | ||||| || || | ||| |||||||| ||| || ||||| ||||| | | Sbjct 1117282 ACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAAT 1117223 Query 147030 ACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCAC 147089 |||| | |||| ||||||| ||||||| ||||| | || || || Sbjct 1117222 TCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTT 1117163 Query 147090 GTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTA 147149 | |||||| || || || || | ||| || | ||||| || | | || || Sbjct 1117162 ATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACTTCCTTCATAGGTTTCATA 1117103 Query 147150 GCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTC 147209 ||| | || | |||||| || || || || || ||| | || || ||||| Sbjct 1117102 TACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATAAATTGTTTC 1117043 Query 147210 GGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGC 147267 ||||||| ||||| ||| | ||||||||||| || || || | ||||| | Sbjct 1117042 AAATATTTGTTGGTTTAAAAGACCG--GCTTCTTCGCTTTCATAGGGAAAACGCATTAAA 1116985 Query 147268 ACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTG 147327 | || || || || ||||| || | ||| | ||||| || |||||| || ||| Sbjct 1116984 ATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAAATTGGAC 1116925 Query 147328 CGCTTCGC-GCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCAC 147386 ||| || || || | ||| || | |||| || ||||| ||||| || || | Sbjct 1116924 TTCTTGGCTTCTGGC-AAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGC 1116866 Query 147387 TACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTAC 147446 ||| ||| |||| | ||| | ||| | ||||||||| || | ||| ||| Sbjct 1116865 AACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGT---TTTTTCTGGTGTTAC 1116809 Query 147447 GCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCT--G 147504 | | ||||| || || || || | ||||||||| || ||| || | || ||| | Sbjct 1116808 GAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAG-GT-GCTGAG 1116751 Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | || | || |||||||| ||| || | |||||| |||||| Sbjct 1116750 TACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATTG 1116691 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624 || || | ||| || | || || || |||||||| || || ||||| ||||||| | Sbjct 1116690 CTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGAT 1116631 Query 147625 TCAACGATA--AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT---AGCGGCCCT 147679 || | ||| || | || || |||| ||| || | | | |||| || || | Sbjct 1116630 TCTATAATAGCAAACCATAAAG--CCTGGGCTTCCA-CTGTT--CGATTCGCACGTCCTT 1116576 Query 147680 CGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGG 147739 | | || || | || | | ||||| | ||||| | ||| |||||| | Sbjct 1116575 CTTGCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAG 1116516 Query 147740 GACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACA 147799 |||| | ||| |||||||||| |||||| | || | || | ||| ||| ||| || | Sbjct 1116515 GACATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAA 1116456 Query 147800 GATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840 |||| || | ||| || ||||| | |||||| || ||| || Sbjct 1116455 GATCAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTG 1116415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 148255 TCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCG 148314 || || ||||| || ||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct 1115997 TCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCT 1115938 Query 148315 GCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTAC 148374 |||| || || ||||| || ||||| | ||||| || || | ||||| || Sbjct 1115937 GCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAG 1115878 Query 148375 TTGTAATCAAAATCTAGCTCGTAA 148398 || ||| |||||||| | || ||| Sbjct 1115877 TTATAACCAAAATCTCGGTCATAA 1115854 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 || ||||| | | ||||||| || |||||||| || || || || || |||||| Sbjct 1470216 ACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 1470275 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || || | |||| | |||||||||||||||||| || |||||||| || Sbjct 1470276 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1470335 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | ||| | ||||| | ||| || || || | || | || || Sbjct 1470336 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 1470395 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || |||| || ||||||||| Sbjct 1470396 CCCGTTAGGGTCTTTACAAAGATCTGCATG 1470425 >seq1616 Length=1872136 Score = 120 bits (132), Expect = 3e-22 Identities = 241/349 (69%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || |||| |||||||| | ||| |||| | ||||| ||||||||||| ||| Sbjct 560674 CAATTCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCT 560615 Query 51601 GATGGTCGGTGAGGCCGAGATCGTC-GCGCTTTGCGTGAACCACCAGACTGCGGCCAACG 51659 || | ||| | || || ||| | |||||||| |||| |||| || | | Sbjct 560614 CGTGACCACCCTTGCCCAAGTCATCAGCG-TCGGCGTGAACGACCACGGTGCGTCCTATG 560556 Query 51660 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 51719 | ||| | | ||||| ||||| ||| |||| | || || | ||| || | Sbjct 560555 ATGCTGTCGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGGGCTG 560496 Query 51720 TTGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGA 51779 | || | |||| || |||||||||||||| | |||||| || | || | || Sbjct 560495 TC--AC-CGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGG 560439 Query 51780 GCGCCGTGGTCGCTG--CCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGC 51837 || ||||| || || |||| ||||| ||||| ||| | |||| ||||||||||| Sbjct 560438 GCACCGTGCTCCTTGTTCCGG--GGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGG 560381 Query 51838 TGGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCCCTCGGCAA 51886 || |||| ||||| |||||||| ||||||||||||| | |||| ||||| Sbjct 560380 TGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCA-GTCCCTTGGCAA 560333 >seq1619 Length=1930428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | |||||||| | | | ||||| || || |||||||| ||| || ||| Sbjct 106489 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 106430 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || ||||| Sbjct 106429 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 106370 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | || || | ||||| || |||| Sbjct 106369 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 106310 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 106309 GTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 106268 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| || | ||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 108298 CGCAAACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTA 108239 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || ||||| Sbjct 108238 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 108179 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | || || | ||||| || |||| Sbjct 108178 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 108119 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 108118 GTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108077 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||||||| | |||||||| | | | ||||| || || |||||||| ||| | ||| Sbjct 108754 CGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAGTA 108695 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || ||||| Sbjct 108694 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 108635 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | || || | ||||| || |||| Sbjct 108634 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 108575 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 108574 GTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108533 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | |||||||| | | | ||||| ||||| |||||||||||| || ||| Sbjct 106261 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAGTCGGACAACGTA 106202 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAG-GTATGCC 132021 || || || ||||| || |||| |||| | |||||| |||||||| | | ||||| Sbjct 106201 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGTGAATGCC 106142 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||| || |||| Sbjct 106141 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAG 106082 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTA-TGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 106081 GGTGATGGTCTTGCCAGTCAGAGTCTTGAGCGAAGATCTGCATG 106038 >seq1628 Length=3966273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 3671147 CGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 3671206 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 3671207 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCC 3671266 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | || || | ||||| || || | Sbjct 3671267 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAG 3671326 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| |||||||| | ||| || ||||| Sbjct 3671327 GTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 3671367 >seq3819 Length=1025 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||||| | | ||||| || || ||||||||||| | || || | Sbjct 416 CGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA 357 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| |||||||| || ||||| || || || || || Sbjct 356 TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 297 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | || ||||| || | || | Sbjct 296 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCACCTCCAGGGTAATA 237 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||||||| || | |||||| ||||| Sbjct 236 GTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476534715817680