Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1611 100 9e-18 seq1636 98.7 3e-17 seq1633 98.7 3e-17 seq1632 98.7 3e-17 seq1631 89.7 2e-14 >seq1611 Length=1448063 Score = 100 bits (110), Expect = 9e-18 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 865191 TATGTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTT 865250 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 865251 CAATCCCGGGTTTCGGC 865267 >seq1636 Length=11822988 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 4794062 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 4794003 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4794002 CCGGGTTTCGGC 4793991 >seq1633 Length=7375914 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 5245373 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 5245314 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5245313 CCGGGTTTCGGC 5245302 >seq1632 Length=7162766 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 6043702 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 6043643 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6043642 CCGGGTTTCGGC 6043631 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 6044012 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 6043953 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6043952 CCGGGTTTCGGC 6043941 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 6044194 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 6044135 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6044134 CCGGGTTTCGGC 6044123 >seq1631 Length=6813705 Score = 89.7 bits (98), Expect = 2e-14 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGG-AGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 || ||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct 5516633 GCCGAAATAGCTCAGTTGGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAAT 5516574 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 5516573 CCCGGGTTT 5516565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847374468510