Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1635 120 3e-22 >seq1635 Length=10282868 Score = 120 bits (132), Expect = 3e-22 Identities = 938/1488 (63%), Gaps = 47/1488 (3%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| |||| || ||||||||||| || | | ||| ||||| || || ||| Sbjct 1117701 ACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCCGGTTTTT 1117642 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | || | |||||| || |||||| |||| ||| || ||| | || || || Sbjct 1117641 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCT 1117582 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 ||| || ||| | || || || ||||| || | | || | || || ||||| || Sbjct 1117581 ACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATTTT- 1117523 Query 136819 AATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 ||| || |||| || || ||||||| | |||||| | || || || || | || Sbjct 1117522 AATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGGGG 1117463 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCAT---CATGAGATC 136934 ||| || |||| || | || || || | || ||||| | ||| ||| Sbjct 1117462 AATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATC 1117403 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATA 136994 | | | || || ||| | | | | | ||| ||||| || |||||| | Sbjct 1117402 ATCCCA---TAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACTTGAAA 1117346 Query 136995 TTCGCCCGATAGCACTCTGC--GTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052 ||| || |||| |||| | ||| || | ||| | || | || ||||| |||||| Sbjct 1117345 TTCACCAGATAATACTCGTCTCGTA--TAAATATTTGTGGTATATGGTTCGAATGATTCG 1117288 Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112 || ||||||| ||| |||||||| | ||||| ||||| || | ||||| |||||| Sbjct 1117287 TTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTC 1117228 Query 137113 CGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGAT 137172 | | ||||| | | || ||| || || ||| | ||| || ||||| | Sbjct 1117227 CTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAG---GTTCGTT 1117171 Query 137173 TGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAA 137232 | ||| ||| ||||| |||| | || | || ||| || |||||||| || |||| Sbjct 1117170 GGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACTTCCTTCATAG 1117111 Query 137233 GAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAA 137292 | |||||| ||| || || |||||| ||| | || || ||| | ||| Sbjct 1117110 GTTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATAA 1117051 Query 137293 ATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCC 137352 || ||||| | |||| | || || | ||||||| ||| || ||||| | | | Sbjct 1117050 ATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGC 1116991 Query 137353 AATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAA 137412 | || | ||||| || || | ||||||| ||| |||||||| || | || | ||| Sbjct 1116990 ATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAAA 1116931 Query 137413 TTTGATATTTGAGCG-CTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATT 137471 || || | | || || |||| || ||| |||| |||||||||| | || ||||| Sbjct 1116930 TTGGACTTCTTGGCTTCTGGCAAGGGG-TAATAGTTGATGTCTATAATTTTGTTAAGATT 1116872 Query 137472 GTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACTGTTT 137531 || | ||| | ||| |||| | | || |||||| | |||| ||| | Sbjct 1116871 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTT-CTGGT- 1116814 Query 137532 GTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTATTGTC 137591 |||| || || || | || || || ||||| ||||| || || || | || Sbjct 1116813 GTTACGAACATG-TTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAG-GT- 1116757 Query 137592 GCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATTCTTT 137649 |||| || | |||||||| | || | ||| ||| | || || | ||| | | Sbjct 1116756 GCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGT 1116697 Query 137650 TGATTGTTTTTCTCGTTGACGTGA-TCTTTATATATCATATACGGAGTTCCGGTTTCGAC 137708 |||||| | || || | || || || ||| | | ||| || || | || || || || Sbjct 1116696 TGATTGCTCTT-TCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCAC 1116638 Query 137709 TTGAGTCTCAACAATTTTT--CTGTGAAGATCCAACGC---CATAATTTG-TTCTCTAAA 137762 ||| | || | ||| | | ||| || || || || | ||| | | Sbjct 1116637 TTGCGATTCTATAATAGCAAACCATAAAG--CCTGGGCTTCCACTGTTCGATTCGC---A 1116583 Query 137763 CTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACAATCGT 137822 | | | | ||| || | | | || ||| || ||||||||||||| |||| || | Sbjct 1116582 CGTCCTTCTTGCT-CATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACA-TCTT 1116525 Query 137823 TA-GACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTCCTAACCCTTT 137881 | | || ||||| | | ||||||||||||||||| || | | | ||| | || Sbjct 1116524 GAAGGCCAGGACATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTT 1116465 Query 137882 CCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCGG 137941 |||||| ||| ||| |||||| ||| ||| ||| || || || | | ||||| Sbjct 1116464 TCATGAAAAGATCAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTT 1116405 Query 137942 CGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATAT 138001 || | || | ||| | || ||||| ||||| ||| | |||||| ||||| | || Sbjct 1116404 TTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAAT 1116345 Query 138002 AGACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACATGACGCAACATACTAT 138058 | | || | || || |||||| ||| || ||||| |||| || || | ||| Sbjct 1116344 AAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTAT 1116285 Query 138059 TAAAGACACGCAATGCA--GGACCTAAGCCCGCCGCTGTTCCGTTCGT 138104 |||| || | | ||| ||| |||| || || || |||||||| Sbjct 1116284 TAAAAACTCTTA--GCATTGGAACTAATCCATTCGACGTACCGTTCGT 1116239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445022973476160