Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1626 172 6e-38 >seq1626 Length=3432795 Score = 172 bits (190), Expect = 6e-38 Identities = 341/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 146842 AAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTC 146901 ||||| || |||| ||| ||| | | | || || ||||| || || || || || || Sbjct 3220019 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 3219960 Query 146902 CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 146961 | |||||| ||||| || || || ||||| || || || || ||||| |||| | Sbjct 3219959 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 3219900 Query 146962 GTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGC 147021 ||||| | |||||| |||| ||| | ||| || || ||||| | ||||||||| ||||| Sbjct 3219899 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 3219840 Query 147022 GAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGC 147081 | |||| ||| |||||||| || || || ||||||||||| | | ||| |||||| Sbjct 3219839 GCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAGC 3219780 Query 147082 TGGCACGAGAGCTCCCC----GTCGGC--CACGTAAAACTGGCACAGGATGTGGCACGGC 147135 |||||||| ||||| || ||| || ||||| ||||| ||| ||||| ||| Sbjct 3219779 TGGCACGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 3219720 Query 147136 GGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC 147195 || || ||||| ||| | |||| || ||||| || || | | | ||| | | || Sbjct 3219719 GGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCAGACATGATGATCCGAC-GATC 3219661 Query 147196 -TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCC 147254 || || | | || || || || | || ||||| | ||||| ||| | Sbjct 3219660 GGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAATTGGTCGATGCCCTTGCCGCT 3219601 Query 147255 GTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 ||||| | ||| | ||||| | || ||| |||||||| | |||||| ||||| || Sbjct 3219600 GTAGTCATCGTCGC-AAGTCC-CATATTCGGCACCAAAGTGGCGCCACTGAAAGCCATAG 3219543 Query 147313 ACTGGCCCCAGGTCGCC 147329 ||||| ||||| || || Sbjct 3219542 ACTGGACCCAGATCTCC 3219526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583394364763200