Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1596 156 6e-32 seq1592 152 7e-31 seq1611 87.8 3e-11 >seq1596 Length=810552 Score = 156 bits (172), Expect = 6e-32 Identities = 246/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 |||||||| ||||| || || ||| | | |||||||| | || || | ||||||| Sbjct 493561 AAGCGCAGCATGGCGCAGCGCGACTGTATCGGCTCGATGATC-TTCTCGCTGGTGTTGCA 493619 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990 |||||| || || || ||||| ||| | | |||||||||| ||| || || ||||| | Sbjct 493620 GGCCAGTGCGAAGCGAGTCGTGTTGCTGTAGATTTCCATGGTGCGA-CGCAGCGCCTGCT 493678 Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 |||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | | Sbjct 493679 GGGCGCCCTCCGTCATGCTGTCCGCCTCGTCCAGGATAACGATCTTGTGACGACCCTTGG 493738 Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 | || ||| ||| | ||| ||||| | |||||||| || || | ||||| Sbjct 493739 GTAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCGC 493798 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 |||||| ||| || || || || ||||| ||||| | | | | || | |||| || Sbjct 493799 GCTCGTTCGAGGCATTCAGCTCCAGCACTGCCTCCTTGTAGCTGTCTCCGAGCAGGATGC 493858 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 | ||||||||| ||| ||||||||||||| ||| || |||||| Sbjct 493859 GGGCCAGGCACTGAATGGTCGTGGTCTTGCCAACGCCAGGAGGACCC 493905 >seq1592 Length=614636 Score = 152 bits (168), Expect = 7e-31 Identities = 328/483 (68%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853 |||| || |||||||| ||||||| || ||||| || || || | ||| || | Sbjct 388212 AGGCGGAAGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAG--GACGCGACGGA 388155 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| || | ||| |||||||| | || ||| || || || ||||| || || Sbjct 388154 CTGGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTT-CG 388096 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | ||| || ||||| || |||||| ||| || ||||||| | ||||| || Sbjct 388095 CTGCCTCGGACGGCATTGTTAACGAGAATTTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 388036 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | |||||||||||| || ||||| |||||||| ||||| || || | ||||| || | Sbjct 388035 TCACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 387976 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| | || || ||||||||| | ||| ||| ||| ||| || | || Sbjct 387975 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCA 387916 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 || || || || ||||| | || | | ||||| |||||||| ||| ||||| | Sbjct 387915 ATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-A 387857 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCAT 1456212 | || | | | ||||||||||||| | | | |||||| | ||| || || || Sbjct 387856 TCCTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAAT 387798 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || ||||| || | | ||||||||||| |||||||| || ||||||||||| Sbjct 387797 CTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGG 387738 Query 1456273 TCT 1456275 ||| Sbjct 387737 TCT 387735 >seq1611 Length=1448063 Score = 87.8 bits (96), Expect = 3e-11 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 1817560 ACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAA 1817617 ||||||||||||| || || ||||| |||||||||||||||||||||||||| || || Sbjct 979707 ACCTCGGCGCGCGTCTC-CATTGACTGCGGCACATGGAGGTTCATCTCGTCGCCATCGAA 979765 Query 1817618 GTCGGCATTGTAGG 1817631 ||||||||||||| Sbjct 979766 ATCGGCATTGTAGG 979779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176572951303756