Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1635 634 8e-177 seq1592 100 4e-16 >seq1635 Length=10282868 Score = 634 bits (702), Expect = 8e-177 Identities = 1258/1849 (68%), Gaps = 24/1849 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| |||| ||| ||||| |||||||| || || |||| | | ||| Sbjct 1117677 GCAGGTTTTGTGCGTAAATAATACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 1117618 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| | ||| || | || || |||| |||| ||| | || |||||| Sbjct 1117617 TGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAATGACTGACTT 1117558 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || |||||||| || |||||||| || | ||| | ||||||| Sbjct 1117557 TGATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTTACTGAAATTTCC 1117498 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCT---GGAA--GGCTCG-TATTTTGAATG 68628 || | ||| ||| ||| | | | | | | | |||| | || ||| ||||||| Sbjct 1117497 CATACAGTTTTATAAA---GATCGCGAACCTTTTGGGGAATAGTTTCAATATCTTGAATG 1117441 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 || || | ||| || ||| |||| || |||||||||| ||| || | || ||| Sbjct 1117440 GAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAATTCTGTT 1117381 Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 ||| | || | | ||| |||| || | ||||||||| |||||||| |||| | || Sbjct 1117380 AAATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 1117321 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 |||||||| ||||||||||||| | ||||| ||||| |||| |||||| ||||| ||| Sbjct 1117320 TAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGAT 1117261 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || || ||||| || || || || || ||| |||| || || || | || | || Sbjct 1117260 GCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCC 1117201 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || || || ||||||||| || | | ||| || ||| | ||| ||||||||| Sbjct 1117200 TTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTATCCCACATATCATATTGTAGA 1117141 Query 68929 ATTCCGTTACTTGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 ||||| || || || | || ||| | ||| |||||||| ||| | |||||| | Sbjct 1117140 ATTCCCTTGCT--CACAGGACTTCCTTCATAGGTTTCATATACTCCAAATTCTTCAGCAA 1117083 Query 68987 GTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 69046 |||||||||| || || | || || ||||||||||||| || || | | || | | Sbjct 1117082 GTTCACAACTAGCTTCCAGAGCCCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAA 1117023 Query 69047 CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCT 69106 |||||| || || | ||| || | | | ||| || || || || || || | Sbjct 1117022 GACCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAAACCTT 1116963 Query 69107 GAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT-TCAGCTTCTGGAATAGGA 69165 |||| || |||||||| || | ||| || | | ||| |||| | |||||||| | || Sbjct 1116962 GAACACCTATACCGATTGGACGATGCCT-TAAATTGGACTTCTTGGCTTCTGGCAAGGGG 1116904 Query 69166 TAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT 69225 ||||| || || ||||||||||| ||||||||| | | || ||| || || ||| Sbjct 1116903 TAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTT 1116844 Query 69226 AGTTTGAGAAAATCAAA---TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCT 69282 | ||| |||||| | | | | | | || ||||| |||||||||| || ||| Sbjct 1116843 AATTTTTTGAAATCATACGTTTTTTCTGGTGTTACGAACATGTTCAGTGCTATGGAAGCT 1116784 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | ||| || || || ||||||| || || || | | || |||||||||| |||| Sbjct 1116783 AAATTGCAGACAGCGACCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTA 1116724 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 || ||||| || || || | |||||| ||||| |||||| | ||||||| ||||| || Sbjct 1116723 CTGCATTTAATGGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAA 1116664 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 || || | || ||||||| || | || ||||| ||||||| ||| | || Sbjct 1116663 AGCATGTATGGGTTACCAGTCTCCACTTGCGATTCTATAATAGCAAACCATAAAGCCTGG 1116604 Query 69463 GCATTTATTACGGTC--TTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGA 69520 || | | | | || || ||| |||| ||||||| ||| ||| ||| | Sbjct 1116603 GCTTCCACT--GTTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGCTCTTCAA 1116546 Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 ||| || ||||||||||| | | |||||||||| || |||||||||||| ||||| Sbjct 1116545 ATTTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAACGACCAGC 1116486 Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640 |||| ||| ||| |||||||| || ||||| |||||||| ||||| ||| |||| Sbjct 1116485 TTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAGAGCGTAAAAAAGAT 1116426 Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700 | | | ||| |||||||| ||||| || ||| |||| || || | |||||| | || || Sbjct 1116425 CACGTGCTCTGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACAT 1116366 Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760 | |||||||| || |||| ||| || || | | | || |||| ||| |||||||||| Sbjct 1116365 CTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGAT 1116306 Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA-TAATACCATTAGATTTA 69819 | | |||| || |||||| | ||||| ||||| |||| |||| ||||| || || Sbjct 1116305 CAACATATCGTGCCACATTATTAAAAACTCTTAGCATTGGAACTAAT-CCATTCGACGTA 1116247 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 || || |||||| | || | | ||| | || ||||| | || | || || ||| Sbjct 1116246 CCGTTCGTTCCACATATGGATGTGCCTTTAGCACGAATGCAATGAACATTAAGTCCAATT 1116187 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || ||||| || || || || ||||| ||| | || | | | ||||| || || Sbjct 1116186 CCACCTGCTGACTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATT 1116127 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||| |||| | | ||||||||| |||| |||| | | | ||| | ||| Sbjct 1116126 GAATCCGAATTCATTGTCAAAAGAAAACATGAGGACAATTGAGGTCGATTTGTTGCAGCA 1116067 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||| | || || || || || || || || |||||| || || ||||| ||||| Sbjct 1116066 GCAAAAAGCGTTGGCGAGGCATGCGTAAAATATCGTTCAGACAGTAGGTTGTAAGTTTCC 1116007 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 | || | || ||||| |||||| || | ||||| ||||||| ||| || || Sbjct 1116006 ACTGCCGCATCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGT 1115947 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 || |||||| | |||| |||||| || | || || || || || || ||||| Sbjct 1115946 GGACGTTCTGCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAAT 1115887 Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 ||||||||||| || ||| |||| || ||||||||| | || |||| Sbjct 1115886 CCAAAATAGTTATAACCAAAATCTCGGTCATAAATAATAGCGGAGTTTA 1115838 >seq1592 Length=614636 Score = 100 bits (110), Expect = 4e-16 Identities = 369/572 (65%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 39486 CACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGT 39545 |||| ||||| || || | || || || || || || || || ||||| | ||||| | Sbjct 387547 CACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTT 387606 Query 39546 CTACGGCCTCTGTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATG 39603 | || || || | || ||| |||| | | ||| | || | |||| || ||| Sbjct 387607 CCACAGCATCCCTGATGATCTCGATGATGCG--CTCCCGCTTGGGCCGCTGCACTAGATG 387664 Query 39604 TTTAAACATTAAGCAG-GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662 | | |||| | ||| || ||||| || || || || || || | || | |||| Sbjct 387665 GTGATACATGA-GCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGT 387723 Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 | || || || || || ||||| ||||||||||| || |||||||| || | ||||| Sbjct 387724 TGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGC 387783 Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782 ||| ||||||||| ||||| || || ||||| |||| || | ||| | || ||| Sbjct 387784 TGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGC-AAAGTTG 387842 Query 39783 TATCATTATG----TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 ||| | |||||| | ||||| || || || ||||||| ||||| Sbjct 387843 GCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATG 387902 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 || || |||||||| || | || | || | || | || || || || Sbjct 387903 GTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATG 387962 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | || || ||||| || || || | || || || || ||||| || ||||| || || Sbjct 387963 AGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAA 388022 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | ||| || || || || ||||| || ||| | || ||||||| || || || || Sbjct 388023 CGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATG 388082 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATG 40050 || || || || || || |||| ||||| Sbjct 388083 CCGTCCGAGGCAGCGAAGAAGGCCAGCACATG 388114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686798568310320