Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1635 134 2e-26 seq1620 95.1 2e-14 seq1592 87.8 2e-12 >seq1635 Length=10282868 Score = 134 bits (148), Expect = 2e-26 Identities = 580/906 (64%), Gaps = 17/906 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || ||||| || |||||||| || |||| |||||||||| |||||||| || || Sbjct 1117320 TAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGAT 1117261 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 ||||| ||||| || || | || | || | || || | || || ||| |||| Sbjct 1117260 GCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCC 1117201 Query 110828 TTGAGAACATCCCAGTCG--TAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACTGA 110884 || || | ||| || ||| | | | | |||| | |||||||| ||| | || Sbjct 1117200 TTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTA---TCCCACATATCATATTGT 1117144 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | | | | ||| || ||| |||||||||| || ||||||| Sbjct 1117143 AGAATTCCCTTGCTCACAGGACTTCCTTCATAGGTTTCATATACTCCAAATTCTTCAGCA 1117084 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | |||||| || || ||||| | | ||| || |||||||| || | || | Sbjct 1117083 AGTTCACAACTAGCTTCCAGAGCCCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAA 1117024 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 |||||| || ||| | | | || ||||| || | || || | |||| Sbjct 1117023 AGACCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAAACCT 1116964 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGG 111122 |||||||| | ||| || || | || | | ||| ||||| || ||| ||| || Sbjct 1116963 TGAACACCTATACCGATTGGACGATGCCTTAAATTGGACTTCTTGGCT-TCTGGCAAGGG 1116905 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | ||| | || |||| || | | ||| |||||||||| |||| | || || | ||| | Sbjct 1116904 G-TAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTT 1116846 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 | ||||| ||||| | || | ||| | || || | || || || | Sbjct 1116845 TTAATTTTTTGAAATCATACGTTT---TTTCTGGTGTTACGAACATGTTCAGTGCTATGG 1116789 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302 | || |||||||| ||||| |||||| ||| |||||| | |||||||||||||| Sbjct 1116788 AAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATA 1116729 Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362 | || | ||||| || || | ||| | ||| || ||||| | || || | ||||| Sbjct 1116728 AATTACTGCATTTAATGGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCT 1116669 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT 111422 | | |||||||| || | || |||||| || |||| | |||||| ||| | | Sbjct 1116668 TAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGATTCTATAATAGCAAACCATAAAG 1116609 Query 111423 CGGCGGCTGGTACAATG-GCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | |||| | || || || || || ||||| || ||| || || ||||| | Sbjct 1116608 CCTGGGCT--TCCACTGTTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGCTC 1116551 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 |||||| | || ||| | || || || || || | |||||| | | || Sbjct 1116550 TTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAACGA 1116491 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| || | ||||||| || ||||||||||| || |||||||| || | |||| Sbjct 1116490 CCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAGAGCGTAAAA 1116431 Query 111601 GAGATC 111606 ||||| Sbjct 1116430 AAGATC 1116425 >seq1620 Length=1990440 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| || || ||| | || || ||||| || ||||| | ||||| || | ||| ||||| Sbjct 857282 GTCCTTTCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTT 857341 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923 ||| ||||| |||| | ||||| || ||||| || ||| | | |||| || || | Sbjct 857342 GTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGA-GGGAGACCTCGC 857400 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 |||||||||| || ||| | ||||| || | | | || ||| |||||||| | || Sbjct 857401 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGC 857460 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 ||| ||| | |||||||| |||| || || | ||| ||||| || |||| Sbjct 857461 GCTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCAT 857520 Query 182044 CCGCCATATGGGCAATAGAGCGCT 182067 || ||| || || ||||||| Sbjct 857521 CCACCAGGCTGGGGATGGAGCGCT 857544 >seq1592 Length=614636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714 ||| ||||| || ||| ||||| || || ||||| || || || || |||||| || Sbjct 387677 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 387736 Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774 ||| ||||||||||| |||||||||| |||| | || | | || || ||||| Sbjct 387737 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAA 387796 Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 ||| || ||||| |||||| |||| || || ||||| ||| Sbjct 387797 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 387839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627931216564800