Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1635 158 1e-33 seq1592 109 6e-19 seq1620 98.7 1e-15 >seq1635 Length=10282868 Score = 158 bits (174), Expect = 1e-33 Identities = 596/924 (65%), Gaps = 27/924 (3%) Strand=Plus/Plus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || ||||| || | |||||| |||||||| ||||| |||||||| | ||||||| | | Sbjct 1116422 CGTGATCTTTTTTACGCTCTATGGATTCCTGATCTTTTCATGAAACGTGTTGAGGCAAAT 1116481 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 | | ||||| | | |||||| | || ||||| || |||| ||| || Sbjct 1116482 GAAAGCTGGTCGTTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTTTGGGGCGAA 1116541 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA 104875 | ||||||| || || || || ||| ||||||| || |||| | || ||| | Sbjct 1116542 AAATTTGAAGAGCTCTATGTCAAATATGAGCAAGAAGGACGTGCGAATCGAACAGTGGAA 1116601 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 || | | | ||| |||||| | | || ||| |||||||||| ||||||||| Sbjct 1116602 GCCCAGGCTTTATGGTTTGCTATTATAGAATCGCAAGTGGAGACTGGTAACCCATACATG 1116661 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 |||| || || ||||||| |||||| |||||| | ||| | || || || | Sbjct 1116662 CTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAAAATGTTGGCACCATTAAATGC 1116721 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||| | ||||||||||| | || | ||| |||||| ||||| || || Sbjct 1116722 AGTAATTTATGTACAGAAATTGTCGAGTACTCAGCACCTGATGAGGTCGCTGTCTGCAAT 1116781 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAA 105115 | || || || || || || || || ||||| ||| || | ||||| || Sbjct 1116782 TTAGCTTCCATAGCACTGAACATGTTCGTAACACCAGA---AAAAACGTATGATTTCAAA 1116838 Query 105116 AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAAT 105175 ||| | | ||||| || |||||||| ||||||| || |||| | |||| || | || Sbjct 1116839 AAATTAAAAGAAGTAACCAAAACTGTTGCCAAAAATCTTAACAAAATTATAGACATCAAC 1116898 Query 105176 TTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 | ||||||| ||| ||| || || || ||| | || || |||||||| ||| | | Sbjct 1116899 TATTACCCC-TTGCCAGA-AGCCAAGAAGTCCAATTTAAGGCATCGTCCAATCGGTATAG 1116956 Query 105234 GTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG 105293 ||||||| ||| | || || | || ||| | || | | ||| ||| |||| Sbjct 1116957 GTGTTCAAGGTTTAGCTGACGCTTTAATTTTAATGCGTTTTCCCTATGAAAGCGAAGAAG 1117016 Query 105294 CGAAGG------AAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 | || ||| ||| | |||||||| || || ||| | ||||| || | Sbjct 1117017 C--CGGTCTTTTAAACCAA----CAAATATTTGAAACAATTTATTTTGGGGCTCTGGAAG 1117070 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | |||| || | || || | ||| ||||||||||| ||| || ||| | | Sbjct 1117071 CTAGTTGTGAACTTGCTGAAGAATTTGGAGTATATGAAACCTATGAAGGAAGTCCTG-TG 1117129 Query 105408 CACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGA--CCAA-GCTTCACTACGAC 105463 |||||| | || |||| |||||||||||| | | | |||| | | | || Sbjct 1117130 AGCAAGGGAATTCTACAATATGATATGTGGGA---TAAAACTCCAACGAACCTATGGGAT 1117186 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||| || || |||||| ||| || || | || || | || | | | || Sbjct 1117187 TGGCAAAGCCTGAAGGAAGACATTAAAAAGCACGGAATTAGGAATTCGTTGTTAGTAGCG 1117246 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| ||||| || || |||||||| |||||||||| |||| || ||||| || Sbjct 1117247 CCGATGCCTACAGCATCTACTGCACAAATTATGGGTAATAACGAATCATTCGAACCATAT 1117306 Query 105584 ACGACGAACATCTATCTGAGAAGA 105607 || || || || ||| |||| || Sbjct 1117307 ACCACAAATATTTATACGAGACGA 1117330 >seq1592 Length=614636 Score = 109 bits (120), Expect = 6e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| | | || |||||| || || || |||||||| ||| ||| Sbjct 387839 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 387780 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | || | |||||| |||||||| ||||||||||| ||||| |||||||||||| Sbjct 387779 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 387720 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||| ||||| |||||||| || || ||| || ||||||||| Sbjct 387719 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 387677 >seq1620 Length=1990440 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||| || ||| | || || ||||| |||||||| | |||||| || | || || ||| Sbjct 857283 TCCTTTCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 857342 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || ||||| | ||||| | |||| || || || || | ||| ||||| || ||| Sbjct 857343 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 857402 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 |||||||| || | |||| || || | | | || ||| ||||| || | ||| | Sbjct 857403 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 857462 Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697 ||| || | |||||| | | |||| |||||||| || ||||| || |||||| Sbjct 857463 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 857522 Query 168698 GCCATGTGTGCGATAGAACGCT 168719 ||| | | ||| || |||| Sbjct 857523 ACCAGGCTGGGGATGGAGCGCT 857544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583167201223120