Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1630 232 2e-55 seq1635 185 3e-41 seq1619 105 2e-17 seq1617 87.8 5e-12 seq1633 86.0 2e-11 >seq1630 Length=6141320 Score = 232 bits (256), Expect = 2e-55 Identities = 738/1131 (65%), Gaps = 29/1131 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || ||||| || || || || |||||||| | ||| | || ||| Sbjct 3316999 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAG 3317058 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || ||||| | || || ||||| || ||||| || || Sbjct 3317059 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACG 3317118 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| ||||||||||| | || || ||||| | || || |||| | Sbjct 3317119 GACACGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAA 3317178 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 ||| | || ||||| ||||| || |||||| | |||||| || | ||| | || Sbjct 3317179 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTT----GAGGATTCTGCTGTGCA 3317234 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | || || ||| || ||| || || || | || Sbjct 3317235 GTCTGACATGAAGCACTGGCCCTTCGATGTGGTCAGCGTAGATGGC---AAGCCCAAGAT 3317291 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 ||||||| || || | ||| | || || || ||||| || || || || ||||| Sbjct 3317292 TGAGGTTACGTACAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCCTCCATGGT 3317351 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || ||||||||||| | || || || || | || | ||||| || |||| || Sbjct 3317352 GTTGACCAAAATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACAGTGACCAATGCCGT 3317411 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || ||||| |||||||| || || || | |||||| || || || ||||| || | Sbjct 3317412 CATCACTGTGCCAGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGATGCCGGTAC 3317471 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || || ||||| || | || || || || ||||| || || || || || || Sbjct 3317472 CATTGCCGGATTGAATGTGCTGCGTATCATCAACGAGCCCACAGCCGCTGCTATCGCCTA 3317531 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 ||| || || || | | || || || | |||||||| ||| | ||||| || Sbjct 3317532 TGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTGGCGG 3317591 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || | || | | || || || || || || || ||| | || || Sbjct 3317592 TACCTTCGATGTGTCCATTCTGTCGATCGATGACGGCATCTTCGAGGTCAAATCTACGGC 3317651 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||||| ||||||||||| || ||||| || || ||||| || | || ||||| | Sbjct 3317652 CGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTGTGCA 3317711 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATGCGTC 349970 || || ||||| ||||| || | || | | | || | | || |||||| Sbjct 3317712 GGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTGCGTC 3317767 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | || || || || || || |||||| || | || || | ||||| || | Sbjct 3317768 GTCTGCGCACCGCCTGCGAGCGCGCAAAGCGTACCCTCTCGTCGTCCACCCAGGCCAGCA 3317827 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 |||| ||||| ||||| || || | ||||||| | || || || ||||| || | Sbjct 3317828 TTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCCCGTT 3317887 Query 350091 TTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | || || || | | ||||| || | ||| || ||||| || ||||| || | Sbjct 3317888 TCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGACCCCGTGGAGAAGGCTC 3317944 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205 | || || || || | || || | || | || | || | || ||||| || Sbjct 3317945 TGCGTGACGCCAAGCTG--GACAAGTCGGCCATCCACGACATTGTGCTGGTCGGTGGCTC 3318002 Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265 || ||||| || || || || | | || || | || || ||||| || | Sbjct 3318003 CACCCGTATCCCCAAGGTGCAGCGCCTGCTCCAGGATCTGTTCAACGGCAAGGAGCTGAA 3318062 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || || ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 3318063 CAAGTCGATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCCGTCCAGGC 3318113 >seq1635 Length=10282868 Score = 185 bits (204), Expect = 3e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | ||| | || ||||| || ||||| ||||||||||| Sbjct 1470198 CCACCACGAAGCCGAAGTACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGAC 1470257 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | |||||| |||||||| | ||| || ||||| ||||| | ||| || ||||| |||||| Sbjct 1470258 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 1470317 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||||||||| ||||| || || ||||| ||||| || || | ||| || ||||| || Sbjct 1470318 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 1470377 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || ||||| || |||||||| |||||||| Sbjct 1470378 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 1470424 Score = 120 bits (132), Expect = 9e-22 Identities = 291/435 (67%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 204909 ACATAAATTACTAGACTTAATAGTACCAAGGTTTTGTTGATTTGTTTTATAATTAACAGC 204968 |||||||||||| | ||||| || |||| ||||||||||| | || |||| | Sbjct 1116733 ACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGA 1116674 Query 204969 ATCTTTATATAACATATATGGTGTACCTGTTTCCATTTGCGAATCTAAAATTTTGATCCA 205028 ||| ||| | | ||| ||||| |||| || |||| |||||| |||| ||| | ||| Sbjct 1116673 ATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGATTCTATAATAGCAAACCA 1116614 Query 205029 TAAATCACGAGCattaa---tttgtttagtaaataaattttttgattcatatttgagata 205085 |||| | | || | | || | || | | | || ||| | ||||||||| ||| Sbjct 1116613 TAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCC--TTCTTGCT-CATATTTGACATA 1116557 Query 205086 taattttttataattatCTCCATAA-CATTCTGATAATCCAGGTGTTCTATCTGGACAAA 205144 | | || | | || || || || ||| ||| | ||||| | ||| |||||| | Sbjct 1116556 GAGCTCTTCAAATTTTTCGCCCCAAACATCTTGA-AGGCCAGGACATTTATGTGGACACA 1116498 Query 205145 ATAATGACCATTTGCTATTAGTATGTACTCTTTCCATAAACAGATCTGAAATCCAAAGAG 205204 || ||||| | ||| | | || | || ||| || ||||| | |||||| |||| Sbjct 1116497 TCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAGAG 1116438 Query 205205 CATAAAAAAGGTCACGAGCGCGAAGTTCTTCGTCTCCATGATTTTTCTTTAAATCTAAAA 205264 | |||||||| ||||| || | |||||| | |||| ||| | || | ||||||| Sbjct 1116437 CGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAA 1116378 Query 205265 ATTCTTCAATATCCGGATGATGTGGTTCAATATACATAGCAAAACTTCCAGCTCTTTTTC 205324 | || || ||| | ||| || || | ||| |||||||| |||| |||||||| Sbjct 1116377 ACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTC 1116318 Query 205325 CACCACCATTATGAA 205339 |||| || | || || Sbjct 1116317 CACCTCCCTGATCAA 1116303 Score = 96.9 bits (106), Expect = 1e-14 Identities = 290/441 (66%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 202369 GGTTTTCTGCGTAGATAATATATTCCAGTTTTTAGTCCTTGTTTCCAACTATAAAAATGC 202428 |||||| |||||| |||||| ||||| ||||||||||| |||||| ||||||| Sbjct 1117674 GGTTTTGTGCGTAAATAATACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGT 1117615 Query 202429 ATATTTGTTAATGATTTTGCAGTT-GGATCTTCCATCCAAAGATTTAAACTTTGCGATTG 202487 || ||| ||| || | |||| || ||| | | || ||| || || ||| Sbjct 1117614 ATGGATGTCAAT-TTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAATGACTGACTTTG 1117556 Query 202488 ACAAATATAAGCTCCTCTATCTCTAGACATATCTAT--AAGATTTTTCATTGGTATCTCC 202545 | |||| | || |||||||| || ||| | || |||||| | || || ||| Sbjct 1117555 ATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTT--ACTGAAATTTCC 1117498 Query 202546 CAAACAATTTTATATTTTTCTTTTAGTCGTTTT--GGTATAGTGTCGATATATTGAATAC 202603 || ||| ||||||| || | | |||| || ||||| || |||| |||||| Sbjct 1117497 CATACAGTTTTATAAAGATCGCGAA--CCTTTTGGGGAATAGTTTCAATATCTTGAATGG 1117440 Query 202604 TACCTTTATTCTGAATTATATTGTTTTTAATTGAATCATCCCAAATACCTAAATTAATAA 202663 || | | |||||| || ||||| || ||||||||| | | || | | | Sbjct 1117439 AGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAATTCTGTTA 1117380 Query 202664 GATCATTAATTAAATATTTATTAACAATAATAAACTCACCAGCTAGTGTTCTTCTTGAAT 202723 ||| | | ||||| | ||| || | ||| ||||||| || | || ||| | || Sbjct 1117379 AATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTAT 1117320 Query 202724 AAATATTACTTGTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAG 202783 ||||||| | ||| ||||||| || |||| |||||||| | |||||| ||| | Sbjct 1117319 AAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATG 1117260 Query 202784 CAGTTGGCATAGGTGCAACTA 202804 | || ||||| || || |||| Sbjct 1117259 CTGTAGGCATCGGCGCTACTA 1117239 >seq1619 Length=1930428 Score = 105 bits (116), Expect = 2e-17 Identities = 196/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || | ||||| | | || |||||||||| || ||||| ||| | Sbjct 863953 CCCGAGGAGATCTCTGCCATGGTCCTCGGCAAGATGAAGGAAACCGCCGAAGCTTATCTG 864012 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | || || | || || || ||||| || || |||||||||||| Sbjct 864013 GGCAAGAAGGTCACCCACGCCGTGGTCACAGTGCCGGCCTACTTCAACGATGCCCAGCGT 864072 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||||||| |||||| || | |||||| | | || || || ||| Sbjct 864073 CAAGCCACCAAGGATGCTGGCGTCATTGCCGGTCTCAATGTTATGCGCATTATCAACGAA 864132 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || |||||||| || ||||| || || || ||||| ||| || || || || | Sbjct 864133 CCGACTGCTGCGGCCATTGCCTACGGTCTGGATAA---GAGGGAGGGCGAGAAGAACGTG 864189 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 | | || ||| | || || ||||| || ||||| || || || || Sbjct 864190 TTGGTGTTCGATCTGGGCGGCGGTACCTTCGATGTCTCCCTGCTGAC 864236 >seq1617 Length=1869541 Score = 87.8 bits (96), Expect = 5e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543 || |||| |||| ||||| | || || ||| || | |||| || || || || Sbjct 1238498 AAGCCAAAGATTGGTGTTGAGTTCAAGGGCGAAGCGAAGCGCTTTTCCCCGGAGGAGATC 1238439 Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603 || ||||| | || ||||||||||| | || || || ||| | || | || | Sbjct 1238438 AGCTCGATGGTGCTGGTCAAAATGAAGGAGACGGCCGAGGCTTATCTGGGCCAGACCATC 1238379 Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 || || || || || || || || ||||| || || || | ||||| || || || Sbjct 1238378 ACAGACGCAGTCATCACAGTGCCTGCCTACTTCAACGACTCACAGCGCCAGGCCACGAAG 1238319 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 ||||||||| ||||||| || | ||||| || ||||| | ||||| || || || || Sbjct 1238318 GATGCTGGCCGCATTGCAGGCCTCAATGTGCTCAGAATCGTCAATGAGCCGACGGCGGCC 1238259 Query 349724 GCAATTGCATATGGGCTTGATAA 349746 || | || |||||||| || || Sbjct 1238258 GCGCTGGCCTATGGGCTGGACAA 1238236 Score = 87.8 bits (96), Expect = 5e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543 || |||| |||| ||||| | || || ||| || | |||| || || || || Sbjct 1241744 AAGCCAAAGATTGGTGTTGAGTTCAAGGGCGAAGCGAAGCGCTTTTCCCCGGAGGAGATC 1241803 Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603 || ||||| | || ||||||||||| | || || || ||| | || | || | Sbjct 1241804 AGCTCGATGGTGCTGGTCAAAATGAAGGAGACGGCCGAGGCTTATCTGGGCCAGACCATC 1241863 Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 || || || || || || || || ||||| || || || | ||||| || || || Sbjct 1241864 ACAGACGCAGTCATCACAGTGCCTGCCTACTTCAACGACTCACAGCGCCAGGCCACGAAG 1241923 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 ||||||||| ||||||| || | ||||| || ||||| | ||||| || || || || Sbjct 1241924 GATGCTGGCCGCATTGCAGGCCTCAATGTGCTCAGAATCGTCAATGAGCCGACGGCGGCC 1241983 Query 349724 GCAATTGCATATGGGCTTGATAA 349746 || | || |||||||| || || Sbjct 1241984 GCGCTGGCCTATGGGCTGGACAA 1242006 >seq1633 Length=7375914 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 235888 AGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAA 235947 |||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | Sbjct 6472854 AGGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGATCGA 6472795 Query 235948 AACCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 6472794 TGCCCCGCATCTCCA 6472780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515005160538914