Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1592 114 1e-20 >seq1592 Length=614636 Score = 114 bits (126), Expect = 1e-20 Identities = 511/801 (64%), Gaps = 15/801 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| |||| || ||| | || || | ||| || ||| |||| | ||| Sbjct 388201 TCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACTGGGCCCGTCTC 388142 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 | | || |||||| | || ||| || |||||||||||||| || || || Sbjct 388141 ACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTGCCTCGGACGGC 388082 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 ||||| | || ||| | | | | |||| |||| || ||||| | ||||| || Sbjct 388081 ATTGTTAACGAGAATTTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCACAGAGGCACGT 388022 Query 59793 TCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852 | ||||||| | ||| || ||| | | |||||||||| |||| | | Sbjct 388021 TGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTC 387962 Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG-CTGGTCTGTTCCGTGCCATAGAGAC 59911 || || | | | ||| ||| | ||| | || | ||||| ||| || ||||| Sbjct 387961 ATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACT-TGTTCAATGCTATTGAGAC 387903 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGA----- 59966 || || || || | || || || ||||||||| ||||| |||| || Sbjct 387902 CATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATA--TCCTCGAAATCG 387845 Query 59967 GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGC 60026 || ||||| | ||| | || || ||||| |||||||||||||||||| |||| Sbjct 387844 GCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGC 387785 Query 60027 TCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086 || | || || ||||| || |||||||| |||||||| || |||| |||||| Sbjct 387784 AGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 387725 Query 60087 AACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCA 60146 ||||||||||| ||||| ||||| || || || || ||||| ||| | ||| Sbjct 387724 AACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCAC 387665 Query 60147 CACCTATTGGAAAAATGCCCTTCC--AAGGATATTCACAAGATTGTTCAGTG-GGCTTGT 60203 || ||| || | |||| | || || | ||| | |||| | ||| Sbjct 387664 CATCTAGTG--CAGCGGCCCAAGCGGGAGCGCATCATCGAGA-TCATCAGGGATGCTGTG 387608 Query 60204 GAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCT 60263 ||| | ||| |||||| |||| ||||| || || ||| | || || ||| || | Sbjct 387607 GAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGT 387548 Query 60264 GGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAA 60323 | ||| | |||||||| |||| || || || || || | | || | || | Sbjct 387547 GTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTG 387488 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || || ||| | || || |||||| | | ||||||| |||||| |||| || Sbjct 387487 GGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGA 387428 Query 60384 AAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||||||||||| Sbjct 387427 AAGACAAACTTCTTTGAGAAG 387407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548436775482720