Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1620 161 1e-34 seq1626 109 6e-19 seq1592 104 3e-17 >seq1620 Length=1990440 Score = 161 bits (178), Expect = 1e-34 Identities = 305/449 (68%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| ||||| ||||| || || |||| ||||| |||||| | || || | || || Sbjct 857103 CCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 857162 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | | | | || ||||| || ||||| |||| || || ||| || Sbjct 857163 AATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 857222 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| ||| ||| | | | |||||||||||||||| ||| ||| Sbjct 857223 TGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCACAG 857282 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 ||||| || || | || || |||||||| || || | |||||||| | ||| | |||| Sbjct 857283 TCCTTTCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 857342 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | || || |||| || |||| || || || || |||||| |||| || Sbjct 857343 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 857402 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| || |||| | |||||||||| |||| | |||||| |||||||| | || | Sbjct 857403 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 857462 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | ||| ||||| ||| | | || ||||||||||| | |||||||| |||||| Sbjct 857463 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 857522 Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||| | ||||| || |||| | |||| Sbjct 857523 ACCAGGCTGGGGATGGAGCGCTCGTTGTC 857551 Score = 118 bits (130), Expect = 1e-21 Identities = 300/453 (66%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||||||||| || ||||| ||||||| |||||| | || || || Sbjct 857101 ATCCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACC 857160 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || ||||| | | || || || || || ||| | || | | || ||| | Sbjct 857161 ACAATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGG 857220 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | | | | || | || |||| || || | ||||| ||||| || | |||||| Sbjct 857221 GGTGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCAC 857280 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||| || || | |||||| || || ||||| || ||||| || | ||| | || Sbjct 857281 AGTCCTTTCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGT 857340 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||| | || ||| | ||||| |||| |||||| || || ||| || | || | Sbjct 857341 TGTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGC 857400 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 ||||||| || |||| | |||||| | | | || | || ||| |||||||| | || | Sbjct 857401 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGC 857460 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | ||| ||| ||||| || | | | || |||||||||||| || |||| || Sbjct 857461 GCTTGTC--GTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCC 857518 Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||| | || || || |||| | |||| Sbjct 857519 ATCCACCAGGCTGGGGATGGAGCGCTCGTTGTC 857551 >seq1626 Length=3432795 Score = 109 bits (120), Expect = 6e-19 Identities = 219/319 (69%), Gaps = 17/319 (5%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| || | |||||||||||||| || ||||||||| ||||| ||| | | Sbjct 492252 CAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGCTGT 492311 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGC 159057 | || | ||| | |||||| ||||| ||||| || ||| ||||| ||||| || ||| Sbjct 492312 CACGCTGCAACATCATCCACATTGCCTCCACGTAGTCACTG-GCGTGGCCCCAATCCCGC 492370 Query 159058 TTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGC 159110 || | ||| | ||| |||||||| | | | |||| | || | || || || Sbjct 492371 TTCGAATCTAAGTTTCCGAGCTCAA--AGTATTCC--ATTTGGTTCAGGAGAATCTTTGC 492426 Query 159111 CAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGG 159168 || | |||| ||||| | || ||||| | ||||||||| || || ||| ||| Sbjct 492427 CACGCTTCGCGTTATCTTTCTGGTAACAAAATTCTCTCCGCGCC--TCGGACTCTCGTGG 492484 Query 159169 TTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATC 159228 ||||| || || || | || ||| ||| || |||| ||| | ||| || | |||| Sbjct 492485 TTAAAGAGGATTCCATTGCAGGCGTACATATTGTAGGCCTCCCTGTAGTTGATGACTATC 492544 Query 159229 CAGTATCCAAAGAGCTTGG 159247 || | ||| | | ||||| Sbjct 492545 CAAAAACCATACATCTTGG 492563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCT--TCGGG 124543 |||| | ||||||||| | ||||||||||| || ||| ||||||| | || | || Sbjct 492249 CCTCAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGC 492308 Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603 || || |||||||||| | |||||| || | |||||||| ||||| ||||| || Sbjct 492309 TGTC-AC-GCTGCAACATCATCCACATTGCCTCCACGTAGTCACTGGCGTGGCCCCAATC 492366 Query 124604 GCGCTTGGCATCCAGGTTTCCGAGCTC 124630 ||||| | ||| | |||||||||||| Sbjct 492367 CCGCTTCGAATCTAAGTTTCCGAGCTC 492393 >seq1592 Length=614636 Score = 104 bits (114), Expect = 3e-17 Identities = 317/488 (65%), Gaps = 9/488 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842 |||| || || || || | || || ||||| || ||||||||||||| ||||||||| Sbjct 387714 ATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATC 387773 Query 74843 --GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900 |||| || | ||||| |||||||| ||||| || ||||||||| | || || Sbjct 387774 GAGGCAAAGCTG---CCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGC 387830 Query 74901 TGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG 74957 | || || || | || | ||||| | | ||||| || || || || || Sbjct 387831 TCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTT 387890 Query 74958 ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG 75017 || || || | || || || || | ||| | | | ||| | || ||| | | Sbjct 387891 ACAGCCGGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATG 387950 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 ||||||| | | |||| |||| || || | ||| || |||| | Sbjct 387951 TAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAG 388010 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTC 75137 ||||||| | || ||||||| ||||| || |||| ||| | | | | |||| Sbjct 388011 CCGTAGAAGCAACGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAAATTC 388070 Query 75138 TCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGC 75197 || | || |||||||||||||| ||||| || ||||| || |||||||| |||| Sbjct 388071 TCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGC 388130 Query 75198 TCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 || | ||||||||| | |||| ||| || |||| || | ||| | ||| || || Sbjct 388131 TCGTTGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACG 388190 Query 75258 GTCCAGAA 75265 |||||||| Sbjct 388191 GTCCAGAA 388198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547128185512400