Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1604 138 7e-28 seq3819 125 4e-24 seq1619 95.1 8e-15 seq1635 91.5 9e-14 >seq1604 Length=992631 Score = 138 bits (152), Expect = 7e-28 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 939694 AGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 939635 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 939634 CCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 939575 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 939574 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 939516 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || || || ||||||||||| |||||||| ||| Sbjct 939515 GATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 939473 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||||||||| ||||| |||||| || ||||| || || ||| Sbjct 940387 CCGCCACGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 940328 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | |||||| ||||| || || Sbjct 940327 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 940268 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | ||| ||||| |||||| Sbjct 940267 ATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 940209 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 940208 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 940161 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 939922 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 939863 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 939862 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 939803 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 939802 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 939744 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || |||||||||||||| ||||| Sbjct 939743 GATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 939705 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 940150 AGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 940091 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 940090 CCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 940031 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 940030 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 939972 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || ||||||||||| || ||||| Sbjct 939971 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 939933 >seq3819 Length=1025 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||||||||||||||| |||||| || ||||| || || ||| Sbjct 428 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 369 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || || || || | |||||| ||||| || || Sbjct 368 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 309 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | ||| ||| | ||| ||||| ||||| Sbjct 308 ATTCCCTCCTTGTCCTGGATC-TTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCAC 250 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| || || | || ||||| ||||| ||||| Sbjct 249 CTCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 202 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 191 AGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 132 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 131 CCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 72 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 71 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 13 Query 34668 TATCGTTTTACC 34679 || ||||| || Sbjct 12 GATGGTTTTTCC 1 >seq1619 Length=1930428 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | ||||||||| ||||| || | |||| ||||| || ||||| ||||| | Sbjct 106956 CGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGG 106897 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || |||| || || || || ||||| || || |||||||| || || || | Sbjct 106896 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 106837 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| ||| || | || || | || ||||| | ||| Sbjct 106836 GAATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 106778 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || || || || || | || ||||| || ||||||||| Sbjct 106777 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 106727 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | ||||||||| ||||| || | |||| ||||| || ||||| ||||| | Sbjct 108990 CGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGG 108931 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || |||| || || || || ||||| || || |||||||| || || || | Sbjct 108930 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 108871 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| ||| || | || || | || ||||| | ||| Sbjct 108870 GAATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 108812 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || || || || || | || ||||| || ||||||||| Sbjct 108811 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 108761 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||| | ||| |||||| || ||||| ||||| || | || || |||| || Sbjct 106709 CACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAGTACGTCCGTCCTC 106650 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || ||||| || || |||||||| || || || || | ||||||||||| Sbjct 106649 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 106590 Query 34617 GATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||||| || |||||| || ||||| | ||| || || | ||| || || Sbjct 106589 GATCTTAGCCTTGAACGATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTC 106530 Query 34675 TTACCGGTTAA-CGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || ||||||||| Sbjct 106529 TTGCCAGTCAAGAGTCTTGACGAAGATCTGCATG 106496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| ||||||||| ||||| ||||| || | || || Sbjct 108523 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAAGTACGT 108464 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 108463 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 108404 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| | ||| || || | ||| Sbjct 108403 TTGTCCTGGATC-TTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 108345 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || || ||||||||| Sbjct 108344 GATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 108305 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| |||||| || ||||| ||||| || | || || Sbjct 106486 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 106427 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 106426 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 106367 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| | ||| || || | ||| Sbjct 106366 TTGTCCTGGATC-TTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 106308 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || || ||||||||| Sbjct 106307 GATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 106268 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| ||||||||| ||||| ||||| || | || || Sbjct 108067 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGT 108008 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 108007 CCGTCCTCTAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 107948 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 107947 TTGTCCTGGATCTT 107934 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||| | ||| |||||| || ||||| ||||| || | || || |||| || Sbjct 108743 CACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAGTACGTCCGTCCTC 108684 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || ||||| || || |||||||| || || || || | ||||||||||| Sbjct 108683 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 108624 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | || ||| | || ||||| | ||| || || | ||| || || | Sbjct 108623 GATC-TTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCT 108565 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | || || || || ||||||||| Sbjct 108564 TGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108533 >seq1635 Length=10282868 Score = 91.5 bits (100), Expect = 9e-14 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||||||||| || |||||||| | ||||| | ||| || || || || Sbjct 1470233 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 1470292 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||||||||| || || || | ||| || ||||| |||||| ||| | Sbjct 1470293 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATT 1470352 Query 34635 TAAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || || | | || | || || || | ||||| || || || |||| || || | Sbjct 1470353 TTCGATGGTATCCGACGGT-TCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTA 1470411 Query 34694 CAAAAATCTGCATG 34707 |||| ||||||||| Sbjct 1470412 CAAAGATCTGCATG 1470425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314680356423254