Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1619 102 6e-17 >seq1619 Length=1930428 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 106821 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 106880 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || || ||||||||| ||||| ||| Sbjct 106881 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAATCCACTTTGCACTTGGTATTG 106940 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | |||||||||| Sbjct 106941 CGTCTTCGTGGCGGCG 106956 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 108855 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 108914 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || || ||||||||| ||||| ||| Sbjct 108915 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAATCCACTTTGCACTTGGTATTG 108974 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | |||||||||| Sbjct 108975 CGTCTTCGTGGCGGCG 108990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || | || Sbjct 107943 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTAGAG 108002 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||||||| ||| ||| ||||||||||| | Sbjct 108003 GACGGACGTACCTTGTCCGATTACAACATCCAAAAGGAGTCCACCTTGCATTTGGTGCTC 108062 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 108063 CGCCTGCGCGGTGGC 108077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 108399 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 108458 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | ||||||||||||||||||||||| ||| ||| ||||||||||| | Sbjct 108459 GACGGACGTACTTTGTCCGATTACAACATCCAAAAGGAGTCCACCTTGCATTTGGTGCTC 108518 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 108519 CGCCTGCGCGGTGGC 108533 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 106362 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 106421 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 106422 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 106481 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 106482 CGCCTGCGCGGTGGC 106496 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 106593 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 106652 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | || ||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 106653 GACGGACGTACTTTATCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 106712 Query 28003 CGTTTGCGTGGCGGC 28017 || ||||| || ||| Sbjct 106713 CGCTTGCGCGGAGGC 106727 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 108627 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 108686 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | || ||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 108687 GACGGACGTACTTTATCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 108746 Query 28003 CGTTTGCGTGGCGGC 28017 || ||||| || ||| Sbjct 108747 CGCTTGCGCGGAGGC 108761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || ||||| || || |||| |||| ||| | |||||||| Sbjct 106155 GATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACGTTGTCCGAC 106214 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| ||| ||| ||||||||||| | || |||| || ||| Sbjct 106215 TACAACATCCAAAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 106268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355806720656826