Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1619 134 9e-27 seq1635 111 1e-19 seq1604 98.7 7e-16 >seq1619 Length=1930428 Score = 134 bits (148), Expect = 9e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 108306 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 108365 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 108366 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 108425 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || ||||| |||| ||| ||||| |||||||||| Sbjct 108426 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 108485 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| || ||||| || Sbjct 108486 ATCCAAAAGGAGTCCACCTTGCATTTGGT 108514 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| || || || || Sbjct 108534 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 108593 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 108594 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 108653 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || ||||| |||| ||| |||||| |||||||||| Sbjct 108654 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTATCCGATTACAAC 108713 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| || ||||| || | | ||||| ||||| Sbjct 108714 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCTTGCGCGGAGG 108760 Score = 129 bits (142), Expect = 4e-25 Identities = 169/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTC-ACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||| ||||| || || || || || || || ||||| ||||| || || || | Sbjct 106497 ATGCAGATCTTCGTCAAGACTCTTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTC 106556 Query 23670 GGACACTGTTGA-AATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||| | || ||| || || || || ||||| || || | || |||||| Sbjct 106557 GGACACCATCGAGAATCGTTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 106616 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||||| || || |||||||| || ||||| |||| ||| |||||| ||||||| Sbjct 106617 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTATCCGATTAC 106676 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || |||||||| || ||||| || | | ||||| ||||| Sbjct 106677 AACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCTTGCGCGGAGG 106726 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 106728 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 106787 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || |||||||| Sbjct 106788 GACACCATCGAGAATGTCAAGGCTAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGATCA 106846 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| ||| ||||| ||||||||| Sbjct 106847 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 106906 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || ||||| || || || || || Sbjct 106907 CATCCAGAAGGAATCCACTTTGCACTTGGTATT 106939 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 107850 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 107909 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || |||||||| Sbjct 107910 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 107968 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || || || |||| ||| || || ||||||||| Sbjct 107969 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTAGAGGACGGACGTACCTTGTCCGATTACAA 108028 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| |||||||| || ||||| || Sbjct 108029 CATCCAAAAGGAGTCCACCTTGCATTTGGT 108058 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 108762 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 108821 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || |||||||| Sbjct 108822 GACACCATCGAGAATGTCAAGGCTAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGATCA 108880 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| ||| ||||| ||||||||| Sbjct 108881 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 108940 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || ||||| || || || || || Sbjct 108941 CATCCAGAAGGAATCCACTTTGCACTTGGTATT 108973 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| || || || || Sbjct 106269 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 106328 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 106329 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 106388 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || ||||| |||| ||| ||||| |||||||||| Sbjct 106389 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 106448 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| || ||||| || Sbjct 106449 ATCCAGAAGGAGTCCACCTTGCATTTGGT 106477 Score = 114 bits (126), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT-GACTCCAC 23669 |||||||| ||||| || || || || || || || ||||| |||| ||| || || | Sbjct 105339 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTCGTTGTTCGAGCCCTC 105398 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCT--GACAAAGAAGGTGTACCGCCAGAT 23727 |||||| | || | | || || || | ||||| || || | || |||||| Sbjct 105399 GGACACCATCGAGAACGTCAAGGCTAAGATCCCAAGGACAAGGAGGGCATTCCCCCAGAT 105458 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT-AGGCGATTA 23786 || |||||||| || || |||||||| || ||||| |||| ||| ||||| | |||||| Sbjct 105459 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTTATCCGATTA 105518 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || |||||||| || ||||| || | | |||| ||||| Sbjct 105519 CAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGAGG 105569 Score = 111 bits (122), Expect = 1e-19 Identities = 157/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT-GACTCCAC 23669 |||||||| ||||| || ||||| || || || || ||||| ||||||| | || || | Sbjct 105806 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAAGGTCGAGCCCTC 105865 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA--CCGCCAGA 23726 |||||| | || ||| | || | || | | ||||| | || | | || ||||| Sbjct 105866 GGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGGAGCGGCATTCCCCCAGA 105924 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC--GAT 23784 ||| |||||||| || || |||||||| || || || |||| ||| || || | | ||| Sbjct 105925 TCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTAGAGGACGGACGTACGTTTGTCCCGAT 105984 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || |||||||| || ||||| || Sbjct 105985 TACAACATCCAGAAGGAGTCCACCTTGCATTTGGT 106019 >seq1635 Length=10282868 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || || ||||| || || || | || Sbjct 1470424 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 1470365 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || || ||||||||||| | || ||||||||| Sbjct 1470364 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 1470305 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || ||||| ||| ||||||| | || || | ||||| ||| Sbjct 1470304 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAAC 1470245 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || || |||||||| Sbjct 1470244 ATTCAGAAGGAGTCAACCTTGCATTTAGT 1470216 >seq1604 Length=992631 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||| | || |||||||| ||||| || || || || | Sbjct 939474 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCA 939533 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || ||||| || || | || ||||| Sbjct 939534 TCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 939593 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| |||||||| || | |||||| | || ||| Sbjct 939594 CAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGACTAC 939653 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || ||||| || | ||||| || Sbjct 939654 AACATCCAGAAGGAGTCGACTCTGCATTTGGT 939685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337956713961704