Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1626 129 5e-25 >seq1626 Length=3432795 Score = 129 bits (142), Expect = 5e-25 Identities = 174/238 (73%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||| || || || |||| ||| || || ||||| || |||| |||||||| ||| || | Sbjct 3219943 TCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGC 3219884 Query 29706 CCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29764 ||| ||| |||| | | || || || |||||||| || || || | |||| ||||||| Sbjct 3219883 CCGTCTTCAAGCCAGTT-ACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATG 3219825 Query 29765 TTAAAGGGCACCCCGAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCT 29822 || || ||||| || || |||||||| | ||| | ||| || ||||||||||| |||| Sbjct 3219824 TTGAATGGCACGCCAAGGCCCATGTCGGCGCTG--CGCTGATACAGCTGGCACGACAGCT 3219767 Query 29823 CTCCGTCGCTC------ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| | || ||||| ||||| || |||||| || ||||| ||||| Sbjct 3219766 CTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGCGGAAGTGCCAT 3219709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406099650436468