Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq10 132 5e-26
>seq10
Length=19787792
Score = 132 bits (146), Expect = 5e-26
Identities = 306/453 (68%), Gaps = 10/453 (2%)
Strand=Plus/Plus
Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005
||||| | | |||| || || || ||||| || | || ||||| | | ||| ||
Sbjct 12208016 AGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGC 12208075
Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065
||||| || || |||| |||||||| || || ||||| | |||||| |||| |||
Sbjct 12208076 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCA 12208135
Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125
|| ||| |||||| || || || |||| ||||| || || | || ||||| |
Sbjct 12208136 AAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 12208195
Query 17126 GTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184
| || ||| | || ||||| | |||| || || || |||||| || |
Sbjct 12208196 TTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTA--CAGCC 12208252
Query 17185 --CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242
||| || || || || || || || | || ||||| | || ||| || ||
Sbjct 12208253 GGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG 12208312
Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302
|| ||||| | ||||||||| |||||||| | ||||||||||||||||| || |||||
Sbjct 12208313 TCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAG 12208372
Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGT 17360
||||| || || || | || || || ||| || || || || || | ||||| ||||
Sbjct 12208373 AAGCAACGTGCCTCTGTGATCTGCACCTCCTGAC-TA-AAGCGCTCGACCAGATTCTCGT 12208430
Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393
| || |||||||| || ||||| || ||||
Sbjct 12208431 TAACAATGCCGTCCGAGGCAGCGAAGAAGGCCA 12208463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517514611957200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |