Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10 132 5e-26 >seq10 Length=19787792 Score = 132 bits (146), Expect = 5e-26 Identities = 306/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 ||||| | | |||| || || || ||||| || | || ||||| | | ||| || Sbjct 12208016 AGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGC 12208075 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 ||||| || || |||| |||||||| || || ||||| | |||||| |||| ||| Sbjct 12208076 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCA 12208135 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || ||| |||||| || || || |||| ||||| || || | || ||||| | Sbjct 12208136 AAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 12208195 Query 17126 GTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184 | || ||| | || ||||| | |||| || || || |||||| || | Sbjct 12208196 TTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTA--CAGCC 12208252 Query 17185 --CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||| || || || || || || || | || ||||| | || ||| || || Sbjct 12208253 GGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG 12208312 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| | ||||||||| |||||||| | ||||||||||||||||| || ||||| Sbjct 12208313 TCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAG 12208372 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGT 17360 ||||| || || || | || || || ||| || || || || || | ||||| |||| Sbjct 12208373 AAGCAACGTGCCTCTGTGATCTGCACCTCCTGAC-TA-AAGCGCTCGACCAGATTCTCGT 12208430 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 | || |||||||| || ||||| || |||| Sbjct 12208431 TAACAATGCCGTCCGAGGCAGCGAAGAAGGCCA 12208463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517514611957200