Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10 111 2e-19 >seq10 Length=19787792 Score = 111 bits (122), Expect = 2e-19 Identities = 296/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 16183 TAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAG 16242 ||| || | | |||| || ||| |||||||| || || |||||||| | | ||| || Sbjct 12208015 TAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAG 12208074 Query 16243 TTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302 |||||||| || || | || ||||| || || ||||| | ||| || |||| || Sbjct 12208075 CTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGC 12208134 Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362 ||| || |||||| || || || || | ||||| || || | || || || | Sbjct 12208135 AAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAA 12208194 Query 16363 CGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 | || ||| | || ||||| | |||| || || || | |||| | Sbjct 12208195 GTTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCG 12208253 Query 16422 CCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 ||| || || || || || ||||| | || ||||| || ||| || || | Sbjct 12208254 GCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGT 12208313 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 |||| || | |||||||| || ||||| | ||||| ||||||||||| || || |||| Sbjct 12208314 CAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGA 12208373 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 |||| || ||||| | || || || ||| ||| || || |||| ||||| || | Sbjct 12208374 AGCAACGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAA 12208433 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCA 16631 | || ||||| ||||| || || |||| Sbjct 12208434 CAATGCCGTCCGAGGCAGCGAAGAAGGCCA 12208463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511383779062800