Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq10 111 2e-19
>seq10
Length=19787792
Score = 111 bits (122), Expect = 2e-19
Identities = 296/450 (66%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 16183 TAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAG 16242
||| || | | |||| || ||| |||||||| || || |||||||| | | ||| ||
Sbjct 12208015 TAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAG 12208074
Query 16243 TTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302
|||||||| || || | || ||||| || || ||||| | ||| || |||| ||
Sbjct 12208075 CTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGC 12208134
Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362
||| || |||||| || || || || | ||||| || || | || || || |
Sbjct 12208135 AAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAA 12208194
Query 16363 CGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421
| || ||| | || ||||| | |||| || || || | |||| |
Sbjct 12208195 GTTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCG 12208253
Query 16422 CCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481
||| || || || || || ||||| | || ||||| || ||| || || |
Sbjct 12208254 GCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGT 12208313
Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541
|||| || | |||||||| || ||||| | ||||| ||||||||||| || || ||||
Sbjct 12208314 CAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGA 12208373
Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601
|||| || ||||| | || || || ||| ||| || || |||| ||||| || |
Sbjct 12208374 AGCAACGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAA 12208433
Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCA 16631
| || ||||| ||||| || || ||||
Sbjct 12208434 CAATGCCGTCCGAGGCAGCGAAGAAGGCCA 12208463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511383779062800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |