Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq15 181 1e-40 >seq15 Length=6594820 Score = 181 bits (200), Expect = 1e-40 Identities = 244/340 (72%), Gaps = 6/340 (2%) Strand=Plus/Minus Query 145606 AAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCTC 145665 || || || |||| ||| ||| | | | ||| | ||| | ||||| ||||| || | Sbjct 4186024 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 4185965 Query 145666 CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 145725 | ||||||| |||||| || || || ||||| || || || || ||||| |||| | Sbjct 4185964 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 4185905 Query 145726 ACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGG 145785 |||||| ||||| || | || | ||| || | ||||| | |||||||||||||||| Sbjct 4185904 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 4185845 Query 145786 GAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGC 145845 | |||| ||| |||||||| ||||| || || |||||||| | |||||| |||| | Sbjct 4185844 GCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAAC 4185785 Query 145846 TGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGC 145899 |||||||| ||||| |||| || ||||||||||| ||| ||||||||| Sbjct 4185784 TGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 4185725 Query 145900 GGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG 145939 || || ||||| ||| | |||| ||| ||||| |||| Sbjct 4185724 GGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCGG 4185685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590041469151600