Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq10 412 4e-110
seq12 159 4e-34
seq6 143 3e-29
seq3 141 1e-28
seq7 123 3e-23
>seq10
Length=19787792
Score = 412 bits (456), Expect = 4e-110
Identities = 541/744 (73%), Gaps = 4/744 (1%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| ||||| || |||||||| || || |||||||| || || |||||| ||| ||||
Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
||| || | | |||||||||||| | || ||| || ||||||||||| ||||| |
Sbjct 12208508 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTG 12208449
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
|| |||||||| || |||||||||||||||||||| || ||||||||||||| |
Sbjct 12208448 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 12208389
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
| ||||| || |||||||||||||| ||||| ||||||||||| |||||||| || ||||
Sbjct 12208388 CAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 12208329
Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954
| ||||| ||||| ||| | || || ||||| | ||||| || |
Sbjct 12208328 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 12208269
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013
| || ||||| |||||| || |||| | ||||| || ||||| || |||||| ||
Sbjct 12208268 CTATTGAGACCATGCCG-GCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCC 12208210
Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073
| | |||| ||| | |||||| | | ||||| |||||||| || || |||||
Sbjct 12208209 TCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTC 12208150
Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133
||| ||||| || ||| | || |||||||| ||||| || || ||||||||||| |||
Sbjct 12208149 TTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTG 12208090
Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193
|| ||| ||||||||| |||||| | ||||| ||||| || ||||||||||| |
Sbjct 12208089 ACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTC 12208030
Query 117194 CTGTTCAAGCATTTGGTGCAGC-GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252
||| | ||| | ||||||| | || |||| || |||| ||| |||||| ||| ||
Sbjct 12208029 ATGTATCACCATCTAGTGCAGCGGCCCAAGCG-GGAGCGCATCATCGAGATCATCAGGGA 12207971
Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312
|| || | ||||||||| |||||||| ||||| ||||| || | || | || |
Sbjct 12207970 TGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCAT 12207911
Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372
|| || | ||||| || |||||||||||||| ||||| ||||||| |||||
Sbjct 12207910 GAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCT 12207851
Query 117373 GGTCGGCGCCAAGCACTACAACAC 117396
| | | ||| |||||||||
Sbjct 12207850 CGGTGTGGGTAAGATCTACAACAC 12207827
>seq12
Length=1235759
Score = 159 bits (176), Expect = 4e-34
Identities = 180/240 (75%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736
|||| | |||||| ||||||| ||||| ||||| ||||| ||||| ||||||||| | ||
Sbjct 219156 AACGATTCGAAAA-TGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGA 219214
Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796
||||| || | |||| | | | | |||||| || || | ||||| ||||||||
Sbjct 219215 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCAT 219274
Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856
||| | || ||||| || || |||| ||| ||||| |||||||| || | ||||| ||
Sbjct 219275 TCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCT 219334
Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||||||||| | || ||||| | ||| | ||| || | || ||
Sbjct 219335 GTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 219394
>seq6
Length=9197557
Score = 143 bits (158), Expect = 3e-29
Identities = 165/217 (76%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| || || ||||| | || || |||||||||||| | || || || |||| |
Sbjct 542765 ATGCAAATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 542707
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 542706 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 542648
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 542647 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 542588
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||||| | || || ||| | ||| ||||
Sbjct 542587 ACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 542551
Score = 143 bits (158), Expect = 3e-29
Identities = 162/212 (76%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| || || ||||| | || || |||||||||||| | || || || |||| |
Sbjct 542993 ATGCAAATTTTTGTGAAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 542935
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 542934 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 542876
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 542875 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 542816
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||||| | || |||||| | |||
Sbjct 542815 ACATCCAGAAGGAGTCGACTCTGCATTTGGTG 542784
Score = 143 bits (158), Expect = 3e-29
Identities = 162/212 (76%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| || || ||||| | || || |||||||||||| | || || || |||| |
Sbjct 543449 ATGCAAATTTTTGTGAAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 543391
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 543390 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 543332
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 543331 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 543272
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||||| | || |||||| | |||
Sbjct 543271 ACATCCAGAAGGAGTCGACTCTGCATTTGGTG 543240
Score = 143 bits (158), Expect = 3e-29
Identities = 165/217 (76%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || || || || |||||||||||| | || || || |||| |
Sbjct 543677 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 543619
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 543618 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 543560
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 543559 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 543500
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||||| | || || ||| | ||| ||||
Sbjct 543499 ACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 543463
Score = 143 bits (158), Expect = 3e-29
Identities = 165/217 (76%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| || || ||||| | || || |||||||||||| | || || || |||| |
Sbjct 543905 ATGCAAATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 543847
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 543846 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 543788
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 543787 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 543728
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||||| | || || ||| | ||| ||||
Sbjct 543727 ACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 543691
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || ||||| || ||| | || |||||| | |
Sbjct 542537 ATGCAAATTTTCGTGAAGACTCTGACTGGAAAAACTATTACCCTGGAGGTCGAACCTTCT 542478
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || |||| ||||| ||||| |||||| | |||||
Sbjct 542477 GACACCATTGAGAACG-TGAAAGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCA 542419
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 542418 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCGGACTACAA 542359
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| | || || ||| | ||| ||||
Sbjct 542358 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 542323
Score = 140 bits (154), Expect = 3e-28
Identities = 166/220 (75%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || || || ||||| | || || |||||||||||| | || || || |||
Sbjct 544364 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGA-GCC 544306
Query 40747 A-CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
| |||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |
Sbjct 544305 ATCCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAG 544247
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
||||||| || ||||||| ||| ||||| || ||||| || | ||||| || ||||
Sbjct 544246 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGACT 544187
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||||||| | || || ||| | ||| ||||
Sbjct 544186 ACAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 544147
Score = 138 bits (152), Expect = 1e-27
Identities = 161/212 (76%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| || || ||||| | || || |||||||||||| | || || || |||| |
Sbjct 543221 ATGCAAATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 543163
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 543162 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 543104
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| || || |||||||| || | ||||| || |||||||
Sbjct 543103 AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 543044
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||||| | || |||||| | |||
Sbjct 543043 ACATCCAGAAGGAGTCGACTCTGCATTTGGTG 543012
Score = 138 bits (152), Expect = 1e-27
Identities = 164/217 (76%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| || || ||||| | || || |||||||||||| | || || || |||| |
Sbjct 544133 ATGCAAATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 544075
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| ||||| | ||||
Sbjct 544074 CGACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGACC 544016
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 544015 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTACA 543956
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||||| | || || ||| | ||| ||||
Sbjct 543955 ACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 543919
>seq3
Length=12541198
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| || || || || ||||| ||||||||| |||| || || ||
Sbjct 3173882 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3173941
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||||| || || | ||||| |||||||| ||| | ||
Sbjct 3173942 TCGGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 3174001
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || | |||| ||| ||||| |||||||| |||| || ||| | ||| |||
Sbjct 3174002 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCTTGTCCGATTAC 3174061
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3174062 AACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3174112
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3174797 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174856
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3174857 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174916
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||||||||||
Sbjct 3174917 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 3174976
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3174977 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3175024
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3175253 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175312
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3175313 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175372
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||| ||||||
Sbjct 3175373 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3175432
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3175433 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3175480
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3175481 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175540
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3175541 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175600
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||||||||||
Sbjct 3175601 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 3175660
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3175661 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3175708
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || |||||| |||| ||||| || |
Sbjct 3174113 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTCGAGCCCTCG 3174172
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3174173 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174232
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||||||||||
Sbjct 3174233 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 3174292
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3174293 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3174340
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3174341 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174400
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3174401 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174460
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||| ||||||
Sbjct 3174461 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3174520
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3174521 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3174568
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3174569 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174628
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3174629 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174688
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||| ||||||
Sbjct 3174689 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3174748
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | ||| || | || |||
Sbjct 3174749 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3174796
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3175709 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175768
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3175769 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175828
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||| ||||||
Sbjct 3175829 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3175888
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
|||||||||||| |||| |||| | || ||||| | | |||||||
Sbjct 3175889 ATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGCG 3175937
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| ||||| || |
Sbjct 3175025 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175084
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 3175085 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175144
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| |||||||| |||| || || | ||||||||||
Sbjct 3175145 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 3175204
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| | || || || | ||| | ||| || | || |||
Sbjct 3175205 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGCGGAGGC 3175252
>seq7
Length=13333775
Score = 123 bits (136), Expect = 3e-23
Identities = 248/362 (69%), Gaps = 7/362 (2%)
Strand=Plus/Plus
Query 139348 CGGCTACGTGCTCGGCCT-GCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCG 139406
|||| | ||||| ||||| ||| | || |||||||| ||||| |||||||||||||| |
Sbjct 10666174 CGGCGAGGTGCTGGGCCTTGCCAAG-GGACTGCACGGATTCCATGTGCACGAGTTCGGGG 10666232
Query 139407 ACGCGAGCAACGGGTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACG 139466
|| | |||||| |||| |||| ||||| ||||| |||||| | | ||| ||||
Sbjct 10666233 ACAACACCAACGGCTGCATGTCGTCCGGCCCCCACTTTAACCCCCGGAACAAGGAGCACG 10666292
Query 139467 GCGCGCCCGACGCCGAGATCAGGCACGTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCC 139526
| || ||| || ||||| | | ||| | |||||| |||||||| || | ||| | |
Sbjct 10666293 GTGCCCCCACCGACGAGAACCGCCACTTGGGCGACTTGGGCAACATCCA---GGCAGCCG 10666349
Query 139527 GCGACGCGCTCACCGAGGTGAGCCTGACGGACGGCGTCG-TGTCCCTGTACGGTCCGCAC 139585
| ||| | ||| | || ||| | || ||| || | | | |||| |||| | |
Sbjct 10666350 GTGACAGCCCCACGGCCGTCAGCATCACCGAC-TCGAAGATCACGCTGTTCGGTGCCGAT 10666408
Query 139586 AGCATCATCGGACGGAGTCTGGTCGTGCACACGGACAGGGACGATCTGGGCCTCACCGAC 139645
|||||||| ||||| | ||||||| ||| | ||| || || ||||| |
Sbjct 10666409 AGCATCATAGGACGCACCGTGGTCGTTCACGCCGACGCTGATGACTTGGGCAAGGGTGGT 10666468
Query 139646 CATCCATTGAGCAAGACCACCGGCAACTCGGGCGGCCGGCTCGCGTGCGGCATCATCGGG 139705
|| | ||||||||||||||||| | |||| ||| | | ||||| |||| ||
Sbjct 10666469 CACGAGCTAAGCAAGACCACCGGCAATGCCGGCGCCCGTATTGGCTGCGGTGTCATTGGC 10666528
Query 139706 AT 139707
||
Sbjct 10666529 AT 10666530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515188351250400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |