Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq10 113 8e-20
>seq10
Length=19787792
Score = 113 bits (124), Expect = 8e-20
Identities = 185/263 (70%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508
|| |||||| | | || ||||| ||||| | || || || ||||| | ||| | ||
Sbjct 8707801 CTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGGGAGGGCAAGATGCACGGATTTCTGCGC 8707742
Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGA--AGACGCTTTGAGTT 189566
||||| ||||| ||||| ||||| || ||||| || || || || |||| ||||
Sbjct 8707741 ATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGCTG-GAGTA 8707683
Query 189567 ATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAG 189626
| ||| ||||| |||||||| |||||||| ||||| || || || || |
Sbjct 8707682 CGCG-ATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCTATGTGG 8707624
Query 189627 GTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTG 189686
| || |||||||||||| | || ||||||||| | ||||| || | ||||||| |
Sbjct 8707623 GCTGCATGTGGTCTATTGGGGGCATACACGATATGGGCTGGAAGGAGCGTGCGATATTCG 8707564
Query 189687 GAAAGATAAGATATATGAATTAT 189709
||||||| | || ||||| |||
Sbjct 8707563 GAAAGATTCGCTACATGAACTAT 8707541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923141523591600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |