Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10 113 8e-20 >seq10 Length=19787792 Score = 113 bits (124), Expect = 8e-20 Identities = 185/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| | | || ||||| ||||| | || || || ||||| | ||| | || Sbjct 8707801 CTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGGGAGGGCAAGATGCACGGATTTCTGCGC 8707742 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGA--AGACGCTTTGAGTT 189566 ||||| ||||| ||||| ||||| || ||||| || || || || |||| |||| Sbjct 8707741 ATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGCTG-GAGTA 8707683 Query 189567 ATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAG 189626 | ||| ||||| |||||||| |||||||| ||||| || || || || | Sbjct 8707682 CGCG-ATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCTATGTGG 8707624 Query 189627 GTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTG 189686 | || |||||||||||| | || ||||||||| | ||||| || | ||||||| | Sbjct 8707623 GCTGCATGTGGTCTATTGGGGGCATACACGATATGGGCTGGAAGGAGCGTGCGATATTCG 8707564 Query 189687 GAAAGATAAGATATATGAATTAT 189709 ||||||| | || ||||| ||| Sbjct 8707563 GAAAGATTCGCTACATGAACTAT 8707541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923141523591600