Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4631 96.9 5e-15 >seq4631 Length=7852 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||| | ||| | | ||| ||||| || ||||| || || || |||||||| || Sbjct 716 TCCACCACGAAGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGA 657 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || |||| || ||| || ||||| || ||||| || ||||| | || ||||| ||||| Sbjct 656 CAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGG 597 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| || || Sbjct 596 AATTCCTTCTTTGTCCTG 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743481881356800