Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq10 120 6e-22 seq15 118 2e-21 >seq10 Length=19787792 Score = 120 bits (132), Expect = 6e-22 Identities = 295/445 (66%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| |||||||||| || || |||||||||||||||||||| || || || || || Sbjct 12208182 ATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTT 12208123 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | ||||| | ||| | |||| ||||| |||| |||||| ||| | || || | Sbjct 12208122 TGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 12208063 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATA 102092 |||||||||||||| |||||||||| |||| || | | | | || | Sbjct 12208062 GACGAAGGTCTTCACTGCGACTTTGC---GGTGCTCATGTATCACCATCTAGTGCAGCGG 12208006 Query 102093 CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 ||| | | | || | || | || || ||| || || || ||| || || || | Sbjct 12208005 CCCAAGC--GGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGT 12207948 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | ||||| | ||||||| || || || | || |||||||| | ||| ||||| Sbjct 12207947 TCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGT 12207888 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 |||| || || ||||| ||| || | | || | || | | ||| ||| || Sbjct 12207887 ACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACA 12207828 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 || || || ||| |||||||| | || || || || ||||| ||||| |||| Sbjct 12207827 CTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTG 12207768 Query 102333 AAAAGAGAGTCGCCGAGTATCAACG 102357 | |||| || |||||||| || || Sbjct 12207767 AGAAGAAGGTGGCCGAGTACCAGCG 12207743 >seq15 Length=6594820 Score = 118 bits (130), Expect = 2e-21 Identities = 277/413 (67%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATAC 35454 ||||||| |||| || || || || || || ||||| || |||||||| ||||||| || Sbjct 4185530 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGCCGAATATGGGAC 4185589 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG-GCCAATATACTAAAGACCC 35513 || || || | || ||||| || || |||||| ||||| || | | ||| Sbjct 4185590 TTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGCGCCAAG-TAATTGACACCA 4185648 Query 35514 TGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTC 35573 | || | ||||| ||| | |||| || ||| | ||||||||||| |||| | | Sbjct 4185649 TCAGGCATAATCCGTCCGATCGTCGGATCATCATGTCCGCATGGAATCCGCTGGACATAC 4185708 Query 35574 ACCTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAAT------ 35626 | ||||| ||||| || ||||| || ||| | || || || || | | Sbjct 4185709 CCAAAATGGCACTTCCGCCCTGCCAT-TGTCTGGCACAGTTCTACGTCTCGCAGACCCGC 4185767 Query 35627 GGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTC 35686 ||||| |||| ||||||||||||||||| |||| || | || | |||||||| ||| Sbjct 4185768 GGAGAGCTGTCCTGCCAGTTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTC 4185827 Query 35687 AATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCG 35746 || || || || ||| | || ||||| | |||| ||| | | || | || || Sbjct 4185828 AACATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACG 4185887 Query 35747 GGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 || || ||||||| ||| | || ||||| || | ||| || ||| |||| Sbjct 4185888 GGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGA 4185940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989523267374450