Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq15 167 2e-36 >seq15 Length=6594820 Score = 167 bits (184), Expect = 2e-36 Identities = 325/479 (68%), Gaps = 12/479 (3%) Strand=Plus/Minus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 || |||||| |||||||| ||||| | | |||||| | ||| |||||||| Sbjct 4185994 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 4185935 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 ||||| || || || ||||| |||| |||||| | |||||| |||| ||| ||| Sbjct 4185934 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 4185875 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 || || || || |||| || ||||| ||||||||| ||||||||| || || || || Sbjct 4185874 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCA 4185815 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ 21110 ||||||||||||||| | ||| |||| ||||||||||||||| || || | | Sbjct 4185814 AGGCCCATGTCGGCGCTGCGCTGATACAACTGGCAGGACAGCTCTCCGCGGGTCTGCGAG 4185755 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| ||||| || | || || || || || ||||| | | |||| || Sbjct 4185754 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGA 4185695 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTGGGG---CCGCCTGTTAATTAGATCCACC 21227 ||||| ||| |||| | ||| || |||||| || ||||| || || | Sbjct 4185694 TTCCATGCGGACATGATGATCCGACGATCGGACGGATTATGCCTG---ATGGTGTCAATT 4185638 Query 21228 ACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCC 21287 || | |||| ||||| | |||| || ||||| ||||| || || || Sbjct 4185637 ACTTGGCGCAATTGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCCCATATTCG 4185578 Query 21288 GCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346 || ||||| || | |||||| || || || || || |||||||| ||| || |||||| Sbjct 4185577 GCACCAAAGTGGCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGGTC 4185519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427751027239200