Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq15 167 2e-36
>seq15
Length=6594820
Score = 167 bits (184), Expect = 2e-36
Identities = 325/479 (68%), Gaps = 12/479 (3%)
Strand=Plus/Minus
Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936
|| |||||| |||||||| ||||| | | |||||| | ||| ||||||||
Sbjct 4185994 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 4185935
Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996
||||| || || || ||||| |||| |||||| | |||||| |||| ||| |||
Sbjct 4185934 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 4185875
Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056
|| || || || |||| || ||||| ||||||||| ||||||||| || || || ||
Sbjct 4185874 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCA 4185815
Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ 21110
||||||||||||||| | ||| |||| ||||||||||||||| || || | |
Sbjct 4185814 AGGCCCATGTCGGCGCTGCGCTGATACAACTGGCAGGACAGCTCTCCGCGGGTCTGCGAG 4185755
Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170
||||| ||||| || | || || || || || ||||| | | |||| ||
Sbjct 4185754 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGA 4185695
Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTGGGG---CCGCCTGTTAATTAGATCCACC 21227
||||| ||| |||| | ||| || |||||| || ||||| || || |
Sbjct 4185694 TTCCATGCGGACATGATGATCCGACGATCGGACGGATTATGCCTG---ATGGTGTCAATT 4185638
Query 21228 ACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCC 21287
|| | |||| ||||| | |||| || ||||| ||||| || || ||
Sbjct 4185637 ACTTGGCGCAATTGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCCCATATTCG 4185578
Query 21288 GCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346
|| ||||| || | |||||| || || || || || |||||||| ||| || ||||||
Sbjct 4185577 GCACCAAAGTGGCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGGTC 4185519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427751027239200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |