Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq9 84.2 2e-11 >seq10 Length=19787792 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||||||||| || ||||| || | ||| ||| ||||| | || || |||||| Sbjct 12208176 GCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTG 12208117 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||||| || || | || ||||||||| |||| |||||||||| Sbjct 12208116 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAA 12208057 Query 22870 GGTCTACACTGTGACTTTGC 22889 ||||| ||||| |||||||| Sbjct 12208056 GGTCTTCACTGCGACTTTGC 12208037 >seq9 Length=30819483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCAT-CGTTCACGGCCCAGAAGGGCACGTGCGG 33623 ||||| ||| |||| |||||||||||||| | | |||||| |||||||| ||||| || Sbjct 13441261 CGCATCCCACAGATCGGCGACAAGTTTGCCTCCCGTCACGG-ACAGAAGGGAACGTGTGG 13441203 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 || ||| ||| ||||||||| ||||| ||| || ||| ||| || | | Sbjct 13441202 GATCCAGTATCGGCAGGAGGACATGCCCTTCACCTGCGAGGGACTGGCCCCCGATATCAT 13441143 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 ||||| || ||||| ||||||| || ||||| Sbjct 13441142 TATCAATCCCCATGCCATCCCCTCTCGTATGAC 13441110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356212803750370