Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq10 156 6e-33
>seq10
Length=19787792
Score = 156 bits (172), Expect = 6e-33
Identities = 355/532 (67%), Gaps = 3/532 (1%)
Strand=Plus/Plus
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|| || |||||||| ||||| ||||| | || || |||||||| || || || |||
Sbjct 12208037 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 12208096
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082
||||| || |||||||| || |||||||| || || ||||| ||| ||||||||||
Sbjct 12208097 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 12208156
Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGTCATG--TATC 50139
||||| || || |||||||||| || | ||| || | ||| || | || | ||||
Sbjct 12208157 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 12208216
Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199
|| ||||| || ||||| |||||| ||||| || || || ||||| ||
Sbjct 12208217 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 12208276
Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259
| |||| || | || | || || || || | | || ||||| ||
Sbjct 12208277 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 12208336
Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319
|| || | || || ||||| ||||| || |||||||| || | ||||| || ||||||
Sbjct 12208337 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 12208396
Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379
|| || || ||| || || | | ||| || || || || ||||| ||| || ||
Sbjct 12208397 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 12208456
Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439
|| |||| ||||| ||||| | |||||| || || ||| || |
Sbjct 12208457 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 12208516
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
|| || |||| ||| || |||||||| ||||| || || ||||| ||||
Sbjct 12208517 GCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGCCTCCGCCT 12208568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718225793655600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |