Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq10 132 6e-26
>seq10
Length=19787792
Score = 132 bits (146), Expect = 6e-26
Identities = 291/434 (67%), Gaps = 3/434 (1%)
Strand=Plus/Plus
Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127
|| || |||||||| ||||| || || | || | |||||||| || || || |||
Sbjct 12208037 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 12208096
Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187
||||| || |||||||| || |||||||| || || ||||| ||| ||||||||||
Sbjct 12208097 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 12208156
Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTGTCATG--TATC 42244
||||| || |||||||||||||||| | ||| || | || | | || | ||||
Sbjct 12208157 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 12208216
Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304
|| ||||| || ||||| |||||| ||||| || || || ||||| ||
Sbjct 12208217 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 12208276
Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364
| |||| || | || | || || || || | | || ||||| ||
Sbjct 12208277 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 12208336
Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424
|| || | || || ||||| ||||| || |||||||| || | ||||| || | |||
Sbjct 12208337 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 12208396
Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484
|| || || ||| || || | | ||| ||||| || || ||||| ||| || ||
Sbjct 12208397 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 12208456
Query 42485 AACGCCAATACATG 42498
|| |||| |||||
Sbjct 12208457 AAGGCCAGCACATG 12208470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671099015540400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |