Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq10 264 2e-65
seq3 230 3e-55
seq15 208 1e-48
seq6 91.5 2e-13
>seq10
Length=19787792
Score = 264 bits (292), Expect = 2e-65
Identities = 580/862 (67%), Gaps = 38/862 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| |||||||||| ||||| || |||||||| ||||| || |||||| | || |
Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
||| | ||| | ||||| | ||||| | ||||| || || | |||||||||| |
Sbjct 12208508 GGG---CCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCG 12208452
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
| | ||| || || || || ||||| |||||| | || || ||| ||| || |
Sbjct 12208451 CTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 12208392
Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277
| |||||| ||||| ||||| ||||| || || ||||| |||||||| || |
Sbjct 12208391 TCACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 12208332
Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCT 125334
||||| || ||||||| ||||| || || ||||| || | || || ||
Sbjct 12208331 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTC- 12208273
Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390
|| || || || || ||||| || ||||| ||||| | |||| ||
Sbjct 12208272 --AATGCTATTGAGACCATGCCGGCT----GTAAAGCGCAAGGCGGACTGGGCCATGTCC 12208219
Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447
||||| || | || || | || ||||| | | | || || || |||||
Sbjct 12208218 TGGAT--ATC-CTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTG 12208162
Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507
|| || ||||||||| || || ||||| | ||||||||||| |||||||| || |||
Sbjct 12208161 GAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTC 12208102
Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567
|||||||| ||||| | |||||| | || || || ||||| || || ||||| |||
Sbjct 12208101 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGAC 12208042
Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC---AGCGATGAA 125624
||||| | || ||| || || |||| ||||||| | |||| ||
Sbjct 12208041 TTTGCGGTGCTCATGTATC---ACCATCT--------AGTGCAGCGGCCCAAGCGG-GAG 12207994
Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684
||||| | || | | ||||| ||| || || || ||||| || || ||| ||
Sbjct 12207993 CGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCC 12207934
Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744
|| || |||| |||||||||||||||| || |||| | ||||||| ||||| |||
Sbjct 12207933 CTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTG 12207874
Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804
|| ||||| || || ||| | || | ||||| |||||| | |||||||| ||
Sbjct 12207873 GCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTC 12207814
Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864
|||||||| | || || || || || ||||| ||||| || ||||||||||| |
Sbjct 12207813 AATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCC 12207754
Query 125865 GAGTACAAACGCTACGGTGTCG 125886
|||||| | ||| |||||||
Sbjct 12207753 GAGTACCAGCGCATGGGTGTCG 12207732
>seq3
Length=12541198
Score = 230 bits (254), Expect = 3e-55
Identities = 394/570 (69%), Gaps = 14/570 (2%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
||||| |||||||||| ||||| || || || | | || |||||||| || ||||||
Sbjct 5588131 TTGCGAAAAAAGATGACGCCGGCGCGTGGTCCGCGCAAGGTTTTGTGCGTGGTTGTGGTC 5588072
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| ||||| ||||| || ||| | | |||| || || || |
Sbjct 5588071 ACAATGTCGGCATACTGGAAGGGCGATGGTATGTGACCGGCAGCAACCAGACCTGCCACA 5588012
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || ||||||||||| || ||| ||| | | ||| |||| ||||| ||||
Sbjct 5588011 TGAGCCATATCGGCCATTAGGTAGGCGCCCACATCGTCGCAGATCTGACGGAAGCGTCCG 5587952
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||| | | |||| |||||| | ||||||| ||||| | | ||| |||||
Sbjct 5587951 TAGTCGAGCAGGCGAGAATAGCACGAGATGCCGGCGATGATGATCTGAGGCTTGAAGGCC 5587892
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
||||| |||||| || ||| | ||||| | | || ||| || | |||||||||
Sbjct 5587891 TTGGCCGCCTCGGCCAGCTTGTCGTAGTCAATAATGCCCGTCACGGGGTTCACCTTGTAA 5587832
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAATCCG 127449
|||||||| ||||| |||| || || || || | ||| || ||| |||
Sbjct 5587831 GGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATCCGTTTGGTGGCCGTGAAGAAGCCG 5587772
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
|||||||| || || || ||||||||||| || |||||||| | ||||||| | |
Sbjct 5587771 TGCGTCAGATGACCGCCATCGGGCAGATCCAGGCCCATGATGCGGTCGTGCGGACGACAG 5587712
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| || || |||| | |||||| ||||||||||| || || ||| ||| |||
Sbjct 5587711 ACGCCCACATAGGCGGCCATATTGGCCGGGGAGCCCGAGTATGGCTGGACATTCACGCCC 5587652
Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628
|| || |||||||| |||||| |||| | | |||| ||| || ||||| |||||
Sbjct 5587651 CACTCCTTCTCGTTCAGATTGAAGAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGCTCGAT 5587593
Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658
||| || || |||||||| || ||||||||
Sbjct 5587592 GCGGTCAATGAACTCGTTGCCGCCATAGTA 5587563
>seq15
Length=6594820
Score = 208 bits (230), Expect = 1e-48
Identities = 377/545 (69%), Gaps = 10/545 (2%)
Strand=Plus/Plus
Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125
||| |||||||| ||||| || || || |||||| | |||| || || | |||| ||
Sbjct 4185530 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGCCGAATATGG-GA 4185588
Query 70126 CT-GCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183
|| |||| ||||| || |||| | || ||||||| | ||| | ||||||||
Sbjct 4185589 CTTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGC-GCCAAGTAATTGACACC 4185647
Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243
||| | ||||| | ||| | ||||| | |||| | |||||||||| || |
Sbjct 4185648 ATCAGGCATAATCCGTCCGATCGTCGGATCATCATGTCCGCATGGAATCCGCTGGACATA 4185707
Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA---CGAT 70297
| | |||||||||| || || || || ||| |||| ||||| ||| ||| | |
Sbjct 4185708 CCCAAAATGGCACTTCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGC 4185767
Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357
|| | |||| ||| |||||||| | || |||||||||||||| || || || ||
Sbjct 4185768 GGAGAGCTGTCCTGCCAGTTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTC 4185827
Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417
||||| || ||| | || |||| ||||||| || || | || ||| |||| ||
Sbjct 4185828 AACATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACG 4185887
Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTA 70477
||| || | |||||||| ||||||||||| |||||| | || || | || ||| |
Sbjct 4185888 GGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTG 4185947
Query 70478 AAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTT 70537
|||| ||| || |||| ||||| | || ||||| |||||| | | || | |||
Sbjct 4185948 AAGGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACATCAAGCGACAGGTT 4186007
Query 70538 GAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCT 70597
|| || ||||| |||| ||||||||| || || | |||||||| |||||||||
Sbjct 4186008 GAGAACATTGAAGATTTTCGGTACGAAGACTTCGAGATCATCGGTTACGAGCCATACCCT 4186067
Query 70598 AAGAT 70602
|||||
Sbjct 4186068 AAGAT 4186072
>seq6
Length=9197557
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194
||||| || || |||| ||||||||||| || | || || || || || ||||||
Sbjct 2183494 TGGCCGGTGCAGAATATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGGGCCGAT 2183435
Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254
|| |||| || || | ||||||||||||||| | || | || || ||||| | |||
Sbjct 2183434 GTGGCCATTTTTGCCTCATGCTTTGCCTACATTTCGGACATATCCACGCTGGAGCAGCGC 2183375
Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314
|| | || ||| ||| ||||| | || || ||||| | ||||| || || |||||
Sbjct 2183374 ACCATCCGGGTGACCATATTGGACGTGGTGTATCTGAGTGCCATGCCCACGGGCGTGGCA 2183315
Query 50315 ATCGG 50319
||||
Sbjct 2183314 CTCGG 2183310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741014829080400
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