Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10 264 2e-65 seq3 230 3e-55 seq15 208 1e-48 seq6 91.5 2e-13 >seq10 Length=19787792 Score = 264 bits (292), Expect = 2e-65 Identities = 580/862 (67%), Gaps = 38/862 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||||||||| ||||| || |||||||| ||||| || |||||| | || | Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||| | ||||| | ||||| | ||||| || || | |||||||||| | Sbjct 12208508 GGG---CCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCG 12208452 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | ||| || || || || ||||| |||||| | || || ||| ||| || | Sbjct 12208451 CTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 12208392 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | |||||| ||||| ||||| ||||| || || ||||| |||||||| || | Sbjct 12208391 TCACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 12208332 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCT 125334 ||||| || ||||||| ||||| || || ||||| || | || || || Sbjct 12208331 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTC- 12208273 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 || || || || || ||||| || ||||| ||||| | |||| || Sbjct 12208272 --AATGCTATTGAGACCATGCCGGCT----GTAAAGCGCAAGGCGGACTGGGCCATGTCC 12208219 Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 ||||| || | || || | || ||||| | | | || || || ||||| Sbjct 12208218 TGGAT--ATC-CTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTG 12208162 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || || ||||||||| || || ||||| | ||||||||||| |||||||| || ||| Sbjct 12208161 GAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTC 12208102 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| ||||| | |||||| | || || || ||||| || || ||||| ||| Sbjct 12208101 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGAC 12208042 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC---AGCGATGAA 125624 ||||| | || ||| || || |||| ||||||| | |||| || Sbjct 12208041 TTTGCGGTGCTCATGTATC---ACCATCT--------AGTGCAGCGGCCCAAGCGG-GAG 12207994 Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 ||||| | || | | ||||| ||| || || || ||||| || || ||| || Sbjct 12207993 CGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCC 12207934 Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 || || |||| |||||||||||||||| || |||| | ||||||| ||||| ||| Sbjct 12207933 CTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTG 12207874 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || ||||| || || ||| | || | ||||| |||||| | |||||||| || Sbjct 12207873 GCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTC 12207814 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864 |||||||| | || || || || || ||||| ||||| || ||||||||||| | Sbjct 12207813 AATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCC 12207754 Query 125865 GAGTACAAACGCTACGGTGTCG 125886 |||||| | ||| ||||||| Sbjct 12207753 GAGTACCAGCGCATGGGTGTCG 12207732 >seq3 Length=12541198 Score = 230 bits (254), Expect = 3e-55 Identities = 394/570 (69%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 ||||| |||||||||| ||||| || || || | | || |||||||| || |||||| Sbjct 5588131 TTGCGAAAAAAGATGACGCCGGCGCGTGGTCCGCGCAAGGTTTTGTGCGTGGTTGTGGTC 5588072 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| ||||| ||||| || ||| | | |||| || || || | Sbjct 5588071 ACAATGTCGGCATACTGGAAGGGCGATGGTATGTGACCGGCAGCAACCAGACCTGCCACA 5588012 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||||||||| || ||| ||| | | ||| |||| ||||| |||| Sbjct 5588011 TGAGCCATATCGGCCATTAGGTAGGCGCCCACATCGTCGCAGATCTGACGGAAGCGTCCG 5587952 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | | |||| |||||| | ||||||| ||||| | | ||| ||||| Sbjct 5587951 TAGTCGAGCAGGCGAGAATAGCACGAGATGCCGGCGATGATGATCTGAGGCTTGAAGGCC 5587892 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| |||||| || ||| | ||||| | | || ||| || | ||||||||| Sbjct 5587891 TTGGCCGCCTCGGCCAGCTTGTCGTAGTCAATAATGCCCGTCACGGGGTTCACCTTGTAA 5587832 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAATCCG 127449 |||||||| ||||| |||| || || || || | ||| || ||| ||| Sbjct 5587831 GGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATCCGTTTGGTGGCCGTGAAGAAGCCG 5587772 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 |||||||| || || || ||||||||||| || |||||||| | ||||||| | | Sbjct 5587771 TGCGTCAGATGACCGCCATCGGGCAGATCCAGGCCCATGATGCGGTCGTGCGGACGACAG 5587712 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || || |||| | |||||| ||||||||||| || || ||| ||| ||| Sbjct 5587711 ACGCCCACATAGGCGGCCATATTGGCCGGGGAGCCCGAGTATGGCTGGACATTCACGCCC 5587652 Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || || |||||||| |||||| |||| | | |||| ||| || ||||| ||||| Sbjct 5587651 CACTCCTTCTCGTTCAGATTGAAGAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGCTCGAT 5587593 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||| || || |||||||| || |||||||| Sbjct 5587592 GCGGTCAATGAACTCGTTGCCGCCATAGTA 5587563 >seq15 Length=6594820 Score = 208 bits (230), Expect = 1e-48 Identities = 377/545 (69%), Gaps = 10/545 (2%) Strand=Plus/Plus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| ||||| || || || |||||| | |||| || || | |||| || Sbjct 4185530 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGCCGAATATGG-GA 4185588 Query 70126 CT-GCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183 || |||| ||||| || |||| | || ||||||| | ||| | |||||||| Sbjct 4185589 CTTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGC-GCCAAGTAATTGACACC 4185647 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 ||| | ||||| | ||| | ||||| | |||| | |||||||||| || | Sbjct 4185648 ATCAGGCATAATCCGTCCGATCGTCGGATCATCATGTCCGCATGGAATCCGCTGGACATA 4185707 Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA---CGAT 70297 | | |||||||||| || || || || ||| |||| ||||| ||| ||| | | Sbjct 4185708 CCCAAAATGGCACTTCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGC 4185767 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 || | |||| ||| |||||||| | || |||||||||||||| || || || || Sbjct 4185768 GGAGAGCTGTCCTGCCAGTTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTC 4185827 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 ||||| || ||| | || |||| ||||||| || || | || ||| |||| || Sbjct 4185828 AACATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACG 4185887 Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTA 70477 ||| || | |||||||| ||||||||||| |||||| | || || | || ||| | Sbjct 4185888 GGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTG 4185947 Query 70478 AAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTT 70537 |||| ||| || |||| ||||| | || ||||| |||||| | | || | ||| Sbjct 4185948 AAGGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACATCAAGCGACAGGTT 4186007 Query 70538 GAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCT 70597 || || ||||| |||| ||||||||| || || | |||||||| ||||||||| Sbjct 4186008 GAGAACATTGAAGATTTTCGGTACGAAGACTTCGAGATCATCGGTTACGAGCCATACCCT 4186067 Query 70598 AAGAT 70602 ||||| Sbjct 4186068 AAGAT 4186072 >seq6 Length=9197557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || || |||| ||||||||||| || | || || || || || |||||| Sbjct 2183494 TGGCCGGTGCAGAATATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGGGCCGAT 2183435 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || |||| || || | ||||||||||||||| | || | || || ||||| | ||| Sbjct 2183434 GTGGCCATTTTTGCCTCATGCTTTGCCTACATTTCGGACATATCCACGCTGGAGCAGCGC 2183375 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 || | || ||| ||| ||||| | || || ||||| | ||||| || || ||||| Sbjct 2183374 ACCATCCGGGTGACCATATTGGACGTGGTGTATCTGAGTGCCATGCCCACGGGCGTGGCA 2183315 Query 50315 ATCGG 50319 |||| Sbjct 2183314 CTCGG 2183310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741014829080400