Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq7 96.9 3e-15
>seq7
Length=13333775
Score = 96.9 bits (106), Expect = 3e-15
Identities = 222/325 (68%), Gaps = 7/325 (2%)
Strand=Plus/Minus
Query 20956 CCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAAG 21015
|||||||| | ||| |||| | ||||| || |||||| ||| ||| | |
Sbjct 10666518 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGACCACCCTTG 10666459
Query 21016 CCGAGGTCATC-GCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGG-AC 21073
|| | |||||| ||| || | ||| || |||| | | || || | ||||| | ||| ||
Sbjct 10666458 CCCAAGTCATCAGCG-TCGGCGTGAACGACCACGGTGCGTCCTATGATGCT-ATCGGCAC 10666401
Query 21074 CAAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGG 21133
| |||| | ||| |||| | ||| ||| | ||| | || || || || || |
Sbjct 10666400 CGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGG-GCTGT-CA-CCGGCTG 10666344
Query 21134 AGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTT 21193
||| |||||||| ||||| | ||| || | || || ||| || ||||| | |
Sbjct 10666343 CCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCT 10666284
Query 21194 GGTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACT 21253
|| | ||||||||||| ||||| ||| ||||||||||| || |||| |||||||
Sbjct 10666283 TGTTCCGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACT 10666224
Query 21254 CGTGAACGTGAAAGCCGTGCAGTCC 21278
|||| || || || |||||||||||
Sbjct 10666223 CGTGCACATGGAATCCGTGCAGTCC 10666199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414548598017260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |