Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 >seq7 Length=13333775 Score = 96.9 bits (106), Expect = 3e-15 Identities = 222/325 (68%), Gaps = 7/325 (2%) Strand=Plus/Minus Query 20956 CCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAAG 21015 |||||||| | ||| |||| | ||||| || |||||| ||| ||| | | Sbjct 10666518 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGACCACCCTTG 10666459 Query 21016 CCGAGGTCATC-GCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGG-AC 21073 || | |||||| ||| || | ||| || |||| | | || || | ||||| | ||| || Sbjct 10666458 CCCAAGTCATCAGCG-TCGGCGTGAACGACCACGGTGCGTCCTATGATGCT-ATCGGCAC 10666401 Query 21074 CAAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGG 21133 | |||| | ||| |||| | ||| ||| | ||| | || || || || || | Sbjct 10666400 CGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGG-GCTGT-CA-CCGGCTG 10666344 Query 21134 AGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTT 21193 ||| |||||||| ||||| | ||| || | || || ||| || ||||| | | Sbjct 10666343 CCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCT 10666284 Query 21194 GGTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACT 21253 || | ||||||||||| ||||| ||| ||||||||||| || |||| ||||||| Sbjct 10666283 TGTTCCGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACT 10666224 Query 21254 CGTGAACGTGAAAGCCGTGCAGTCC 21278 |||| || || || ||||||||||| Sbjct 10666223 CGTGCACATGGAATCCGTGCAGTCC 10666199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414548598017260