Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq3 86.0 4e-12
seq4631 84.2 1e-11
>seq6
Length=9197557
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||||||||| | |||||||| || || || ||||| || || | | || |
Sbjct 542323 CGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA 542382
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| ||||| ||| || || | ||| |||||||| | ||| || || || ||
Sbjct 542383 TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 542442
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| |||| ||| || | | ||| ||||| |||| || ||||| || ||
Sbjct 542443 TCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATA 542502
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||||||| || ||||| || ||||||||||||||
Sbjct 542503 GTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537
>seq3
Length=12541198
Score = 86.0 bits (94), Expect = 4e-12
Identities = 148/214 (69%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
|||||||||||| || ||||| || || || |||||||| |||||| | || ||| ||
Sbjct 3175462 CACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTC 3175403
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276
|| ||||| || || || ||||| ||||| || | ||| ||||| || || ||
Sbjct 3175402 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 3175343
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
| | | ||| || || | | || ||||| ||| | || || || || || ||
Sbjct 3175342 GATCTTAGCC---TTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGT 3175286
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || ||||| || ||||| || ||||||
Sbjct 3175285 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 3175252
>seq4631
Length=7852
Score = 84.2 bits (92), Expect = 1e-11
Identities = 149/217 (69%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TC 33216
|| |||||||| || ||||| || || || || |||||||||| | ||| | ||
Sbjct 697 ACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACA----GTGTTCGGCCATC 642
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
||||||||||| ||| || || ||||| || || || | || || |||||||| ||
Sbjct 641 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC 582
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
||| ||| || ||| || || || |||| || || |||||||| ||
Sbjct 581 CTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGT 522
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| ||||| || || ||||| || || |||||| ||
Sbjct 521 CTTGCCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318758990361420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |