Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq3 86.0 4e-12 seq4631 84.2 1e-11 >seq6 Length=9197557 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||||||| | |||||||| || || || ||||| || || | | || | Sbjct 542323 CGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA 542382 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||| |||||||| | ||| || || || || Sbjct 542383 TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 542442 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | ||| ||||| |||| || ||||| || || Sbjct 542443 TCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATA 542502 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || ||||| || |||||||||||||| Sbjct 542503 GTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537 >seq3 Length=12541198 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| || ||||| || || || |||||||| |||||| | || ||| || Sbjct 3175462 CACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTC 3175403 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276 || ||||| || || || ||||| ||||| || | ||| ||||| || || || Sbjct 3175402 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 3175343 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | ||| || || | | || ||||| ||| | || || || || || || Sbjct 3175342 GATCTTAGCC---TTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGT 3175286 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || ||||| || |||||| Sbjct 3175285 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 3175252 >seq4631 Length=7852 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TC 33216 || |||||||| || ||||| || || || || |||||||||| | ||| | || Sbjct 697 ACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACA----GTGTTCGGCCATC 642 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||||||||| ||| || || ||||| || || || | || || |||||||| || Sbjct 641 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC 582 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || ||| || || || |||| || || |||||||| || Sbjct 581 CTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGT 522 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || ||||| || || ||||| || || |||||| || Sbjct 521 CTTGCCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318758990361420