Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4631 187 6e-42 seq6 125 2e-23 seq3 102 2e-16 seq10 89.7 1e-12 >seq4631 Length=7852 Score = 187 bits (206), Expect = 6e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| |||||||| ||| || ||||| || |||||||| ||||| ||||| || |||| Sbjct 706 AGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGG 647 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || ||||| || || | | ||||||||| ||||| ||||||||| Sbjct 646 CCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCT 587 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| ||||| |||||||| | |||||| ||||| ||||| || || Sbjct 586 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTT 527 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || |||||||| |||||||| Sbjct 526 ATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 489 >seq6 Length=9197557 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | || ||||| || || || ||| Sbjct 542341 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 542400 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || ||||| || || ||||||||||| ||||| Sbjct 542401 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTC 542460 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || |||||| ||||| || |||||||| || ||||| || || Sbjct 542461 ACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATAGTTTTTCCAGTCAGAGTC 542520 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 542521 TTCACGAAAATTTGCAT 542537 Score = 116 bits (128), Expect = 9e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | || || || ||||| || || Sbjct 544165 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGTTGCTTGCCG 544224 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || ||||| || || ||||| ||||| || || Sbjct 544225 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 544284 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || || ||||| || || || || || ||||| | ||| Sbjct 544285 ACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTT 544344 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || ||||| ||||||||||||| Sbjct 544345 TTCACAAAGATCTGCATTTTGT 544366 >seq3 Length=12541198 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || ||||| || || || || || | || | ||||| Sbjct 3174096 AGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCC 3174037 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || | | ||| ||||| || || || || || || ||| Sbjct 3174036 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3173977 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || || || ||||| || || || ||| Sbjct 3173976 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTC 3173917 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || || |||||||||||| Sbjct 3173916 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 3173881 >seq10 Length=19787792 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| ||||| || || ||||| || |||||| || |||||| | ||||||||| Sbjct 12208178 TTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGC 12208119 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 ||||||| | || || ||||| || | || ||||| ||||| |||| | | |||| Sbjct 12208118 TGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACG 12208059 Query 269259 AAGGTTTACACTGCGACTTCGC 269280 ||||| | ||||||||||| || Sbjct 12208058 AAGGTCTTCACTGCGACTTTGC 12208037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151327736521320