Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq14 98.7 9e-16 >seq14 Length=11685562 Score = 98.7 bits (108), Expect = 9e-16 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || || ||||| || | || || || |||||||| |||| || ||| | Sbjct 6320768 TCCTGTTGAGCCGAAACCGGCCTCCCCACGTTCGGTGTCTTCCAGCTTGTCGACCATTAC 6320709 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | | |||||| | ||||| ||||| || | |||||| || | ||||| ||| || Sbjct 6320708 CAGTTCTGGGTAGAAGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCAC 6320649 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||| ||||| || || || ||| || || || || || | ||||| ||||||||| Sbjct 6320648 CTCGAAGTCC--GTATCAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCT 6320591 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||||| |||||||| || || || | || || || ||||| || || || Sbjct 6320590 TCGTCCACCACGCCGGCGCCCACATCAATGAAATTCTTCACGGCCAGGCCAGAGCGAGGA 6320531 Query 5477 GCTATGCGTCCGTAG 5491 || | ||| || ||| Sbjct 6320530 GCGACGCGACCATAG 6320516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447723590944800