Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq14 98.7 9e-16
>seq14
Length=11685562
Score = 98.7 bits (108), Expect = 9e-16
Identities = 176/255 (69%), Gaps = 4/255 (2%)
Strand=Plus/Minus
Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298
||| || || ||||| || | || || || |||||||| |||| || ||| |
Sbjct 6320768 TCCTGTTGAGCCGAAACCGGCCTCCCCACGTTCGGTGTCTTCCAGCTTGTCGACCATTAC 6320709
Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358
| | |||||| | ||||| ||||| || | |||||| || | ||||| ||| ||
Sbjct 6320708 CAGTTCTGGGTAGAAGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCAC 6320649
Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416
||| ||||| || || || ||| || || || || || | ||||| |||||||||
Sbjct 6320648 CTCGAAGTCC--GTATCAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCT 6320591
Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476
||||| | ||||| |||||||| || || || | || || || ||||| || || ||
Sbjct 6320590 TCGTCCACCACGCCGGCGCCCACATCAATGAAATTCTTCACGGCCAGGCCAGAGCGAGGA 6320531
Query 5477 GCTATGCGTCCGTAG 5491
|| | ||| || |||
Sbjct 6320530 GCGACGCGACCATAG 6320516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447723590944800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |