Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq14 140 3e-28 >seq14 Length=11685562 Score = 140 bits (154), Expect = 3e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 ||||||||| || | ||| || || || || || ||| |||||||| || | | Sbjct 6320690 GCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCACCTCGAAGTCCGTATCAGA 6320631 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | |||||| || || || |||| ||||||||||||||| |||| | |||||| ||||| Sbjct 6320630 GTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGGCGCC 6320571 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||| || ||||| | ||| || |||||||| ||||| ||||| ||||| || ||| | || Sbjct 6320570 CACATCAATGAAATTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGGAGCC 6320511 Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || |||| || | ||||||||| || Sbjct 6320510 CTCCGGAACTTGAACCTGCAGGTCGGT 6320484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430029294230480