Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq9 125 4e-24
seq10 116 2e-21
>seq9
Length=30819483
Score = 125 bits (138), Expect = 4e-24
Identities = 85/95 (89%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 9921647 AAAAAATCAGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 9921588
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG-TCGACGA 11537
||||| ||||||||||||||||||||| | |||||
Sbjct 9921587 GCTCTAACCAACTGAGCTAATGGGCCGCTGGACGA 9921553
>seq10
Length=19787792
Score = 116 bits (128), Expect = 2e-21
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|||||||||| || |||||||||| |||||||||| ||||||||||||||||||
Sbjct 13553137 AATAAAAAATGTAAACTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 13553196
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| ||||||||||||||||||||
Sbjct 13553197 CACGACGCTCTAACCAACTGAGCTAATGGGCC 13553228
Score = 116 bits (128), Expect = 2e-21
Identities = 91/111 (82%), Gaps = 9/111 (8%)
Strand=Plus/Plus
Query 11428 GAAATATAGAATTAATAAAAAATCAAAT---------TGGCCCATGAAAGGATCGAACCT 11478
|||| |||||||||| |||||| ||| |||||||||| ||||||||||
Sbjct 13558541 GAAAAATAGAATTAAAAAAAAAGAAAAAAGTATTTTCTGGCCCATGAGGGGATCGAACCC 13558600
Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 13558601 GCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 13558651
Score = 114 bits (126), Expect = 7e-21
Identities = 78/88 (89%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 17982000 AAAAATAAAAAGTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 17982059
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 17982060 ACGCTCTAACCAACTGAGCTAATGGGCC 17982087
Score = 114 bits (126), Expect = 7e-21
Identities = 80/91 (88%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|| ||||||| ||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 17984860 AACAAAAAATATTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 17984919
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| ||||||||||||||||||||
Sbjct 17984920 ACGACGCTCTAACCAACTGAGCTAATGGGCC 17984950
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 12775995 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12775936
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 12775935 TGAGCTAATGGGCC 12775922
Score = 102 bits (112), Expect = 4e-17
Identities = 86/104 (83%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAA-ATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCT 11485
|||||| ||| || || | |||||| | |||||||| |||||||||| || |||
Sbjct 17985183 AAATATTGAAAAAAAAAGAGGATCAAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCT 17985242
Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 17985243 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 17985286
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 17982231 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17982290
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 17982291 TGAGCTAATGGGCC 17982304
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 17984677 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17984618
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 17984617 TGAGCTAATGGGCC 17984604
Score = 96.9 bits (106), Expect = 2e-15
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGG-ATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||||| ||| ||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 13559218 AAAAAGTCATCATGGCCCATGGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGA 13559159
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| |||| |||||||||||||||
Sbjct 13559158 CGCTCTAACCAGCTGAGCTAATGGGCC 13559132
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261475934634040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |