Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9 125 4e-24 seq10 116 2e-21 >seq9 Length=30819483 Score = 125 bits (138), Expect = 4e-24 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 9921647 AAAAAATCAGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 9921588 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG-TCGACGA 11537 ||||| ||||||||||||||||||||| | ||||| Sbjct 9921587 GCTCTAACCAACTGAGCTAATGGGCCGCTGGACGA 9921553 >seq10 Length=19787792 Score = 116 bits (128), Expect = 2e-21 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| || |||||||||| |||||||||| |||||||||||||||||| Sbjct 13553137 AATAAAAAATGTAAACTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 13553196 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 13553197 CACGACGCTCTAACCAACTGAGCTAATGGGCC 13553228 Score = 116 bits (128), Expect = 2e-21 Identities = 91/111 (82%), Gaps = 9/111 (8%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAAT---------TGGCCCATGAAAGGATCGAACCT 11478 |||| |||||||||| |||||| ||| |||||||||| |||||||||| Sbjct 13558541 GAAAAATAGAATTAAAAAAAAAGAAAAAAGTATTTTCTGGCCCATGAGGGGATCGAACCC 13558600 Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 13558601 GCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 13558651 Score = 114 bits (126), Expect = 7e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 17982000 AAAAATAAAAAGTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 17982059 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 17982060 ACGCTCTAACCAACTGAGCTAATGGGCC 17982087 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| ||| ||||||||| |||||||||| ||||||||||||||||||| Sbjct 17984860 AACAAAAAATATTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 17984919 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 17984920 ACGACGCTCTAACCAACTGAGCTAATGGGCC 17984950 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 12775995 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12775936 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 12775935 TGAGCTAATGGGCC 12775922 Score = 102 bits (112), Expect = 4e-17 Identities = 86/104 (83%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAA-ATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||||| ||| || || | |||||| | |||||||| |||||||||| || ||| Sbjct 17985183 AAATATTGAAAAAAAAAGAGGATCAAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCT 17985242 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 17985243 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 17985286 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 17982231 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17982290 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17982291 TGAGCTAATGGGCC 17982304 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 17984677 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17984618 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17984617 TGAGCTAATGGGCC 17984604 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGG-ATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||| ||||||||| || |||||||| || |||||||||||||||||||| Sbjct 13559218 AAAAAGTCATCATGGCCCATGGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGA 13559159 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| ||||||||||||||| Sbjct 13559158 CGCTCTAACCAGCTGAGCTAATGGGCC 13559132 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475934634040