Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq275 178 2e-40 seq9 116 6e-22 >seq275 Length=24252 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 2426 CGCTAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 2367 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 2366 CCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 2307 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 2306 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 2247 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 2246 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 2187 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || |||||||| ||||| Sbjct 2186 CCGCACGCTGTACGGTTTTGGCGGTTAA 2159 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 7549 CGCTAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 7490 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 7489 CCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 7430 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 7429 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 7370 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 7369 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 7310 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 7309 CCGCACGCTGTACGGTTTCGGCGGTTAA 7282 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 12708 CGCTAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 12649 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 12648 CCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 12589 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 12588 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 12529 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 12528 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 12469 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 12468 CCGCACGCTGTACGGTTTCGGCGGTTAA 12441 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 19263 CGCTAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 19204 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 19203 CCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 19144 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 19143 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 19084 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 19083 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 19024 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 19023 CCGCACGCTGTACGGTTTCGGCGGTTAA 18996 >seq9 Length=30819483 Score = 116 bits (128), Expect = 6e-22 Identities = 109/136 (80%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| | |||| || ||||||||||| ||||||||||||||||| || Sbjct 10864061 GCCAAACGCCATCGCA-AGGTCTTGCGTGATAACATCCAGGGAATCACCAAGCCAGCCAT 10864003 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| ||||| || ||||| |||||| | || || ||| |||| ||||| | Sbjct 10864002 TCGTCGTCTGGCCCGTCGCGGCGGAGTAAAGCGTATTTCAGGCTTGATCTACGAAGAAAC 10863943 Query 16552 TCGTGATGTTTTGAAG 16567 || | ||| |||||| Sbjct 10863942 CCGAGGTGTCTTGAAG 10863927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070820469470