Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq3961 105 1e-18 seq4491 87.8 4e-13 seq3503 80.6 5e-11 seq2437 80.6 5e-11 >seq3961 Length=21204 Score = 105 bits (116), Expect = 1e-18 Identities = 247/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 4338 TGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAA 4397 ||| || || || ||||||||||| | | |||||||| || | ||| || || || Sbjct 12264 TGTTGGATATATTTTTGAAGTAGAT-TGCGATATCCTGATGATATTCATAATAAGCATAA 12206 Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCAC 4457 | ||||||| ||||| ||| || | ||||| || | ||||| |||||| | Sbjct 12205 TAGTTTACCTTTTTGCCCCGAAAATAAGATTCCACCAGGAGGAAAGCAGACAAAACTAAT 12146 Query 4458 GACAACT--CTGTAC-GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATG 4514 | || || || ||||||||||| ||| | || || | ||| | | | ||| Sbjct 12145 ---AGCTGACTTAACTGATAAAAATAACTATATAATCCATTTTAAGCAGCTACAGTTATG 12089 Query 4515 TTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGA 4574 |||||| ||| | || | || |||||| | ||| || |||| | || || Sbjct 12088 TTTAGAGCAGGGTATGATTTTAAAAAAAATATCTCGAGTTTTATCATTTAATCAGTCCTG 12029 Query 4575 CTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTT 4634 ||||| ||| | ||||| || ||||| | ||||| |||||| ||||| || Sbjct 12028 TTGGCTGAAACCTTATATTGAGCTCAATACATCTCTTAGAAAATTAGCTAGCAATGACTT 11969 Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || | ||||||||| ||||||||| |||||| |||| || || || ||||||||||| Sbjct 11968 TGAGATAAACTTTTACAAATTAATGGTTAATGCCGTTTACGGCAAAACAATGGAGAATGT 11909 Query 4695 ACGAAAA 4701 | ||||| Sbjct 11908 A-GAAAA 11903 >seq4491 Length=15507 Score = 87.8 bits (96), Expect = 4e-13 Identities = 243/367 (66%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 4338 TGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAA 4397 ||| || || || | ||||||||| | | |||||||| || | ||| || || || Sbjct 2887 TGTTGGATATATTTTAGAAGTAGATTTGCGATATCCTGATGATATTCATAATAAGCATAA 2946 Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCAC 4457 | ||||||| ||||| ||| || | ||||| || | ||||| |||||| | Sbjct 2947 TAGTTTACCTTTTTGCCCCGAAAATAAGATTCCACCAGGAGGAAAGCAGACAAAACTAAT 3006 Query 4458 GACA-ACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516 | ||| | |||||||| || ||| | || || | || | | | |||| Sbjct 3007 AGCTGACT-TAAGTGATAAAAAGAACTATATAATCCATTTGAAGCAGCTACAGTTATGTA 3065 Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAA--ATTTGAGCAATCAGA 4574 |||| |||| | || | |||||| | | |||| || | |||| | || || Sbjct 3066 TAGAGCAAGGTATGATTTT--AGAAAAAATATCTAGAGTTTTATCATTTAATCAGTCCTG 3123 Query 4575 CTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTT 4634 ||||| ||| | ||||| || ||||| | ||||| |||||| ||||| || Sbjct 3124 TTGGCTGAAACCTTATATTGACCTCAATACATCTCTTAGAAAATTAGCTAGCAATGACTT 3183 Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || | ||||||||| ||||||||| |||||| |||| || || || ||||||||||| Sbjct 3184 TGAGATAAACTTTTACAAATTAATGGTTAATGCCGTTTACGGTAAAACAATGGAGAATGT 3243 Query 4695 ACGAAAA 4701 | ||||| Sbjct 3244 A-GAAAA 3249 >seq3503 Length=1351 Score = 80.6 bits (88), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672 ||||| |||||| || || || || | ||||||||||||||||||| |||||| |||| Sbjct 613 GAAAATTAGCTAGCAACGACTTTGAGATAAACTTTTATAAATTAATGGTTAATGCCGTTT 672 Query 4673 TTGGAAAGACGATGGAGAATGTACGAAAA 4701 || || || |||||||||||| ||||| Sbjct 673 ACGGCAAAACAATGGAGAATGTA-GAAAA 700 >seq2437 Length=13124 Score = 80.6 bits (88), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672 ||||| |||||| || || || || | ||||||||||||||||||| |||||| |||| Sbjct 653 GAAAATTAGCTAGCAACGACTTTGAGATAAACTTTTATAAATTAATGGTTAATGCCGTTT 712 Query 4673 TTGGAAAGACGATGGAGAATGTACGAAAA 4701 || || || |||||||||||| ||||| Sbjct 713 ACGGCAAAACAATGGAGAATGTA-GAAAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97968827093660