Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq3961 105 1e-18
seq4491 87.8 4e-13
seq3503 80.6 5e-11
seq2437 80.6 5e-11
>seq3961
Length=21204
Score = 105 bits (116), Expect = 1e-18
Identities = 247/367 (67%), Gaps = 8/367 (2%)
Strand=Plus/Minus
Query 4338 TGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAA 4397
||| || || || ||||||||||| | | |||||||| || | ||| || || ||
Sbjct 12264 TGTTGGATATATTTTTGAAGTAGAT-TGCGATATCCTGATGATATTCATAATAAGCATAA 12206
Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCAC 4457
| ||||||| ||||| ||| || | ||||| || | ||||| |||||| |
Sbjct 12205 TAGTTTACCTTTTTGCCCCGAAAATAAGATTCCACCAGGAGGAAAGCAGACAAAACTAAT 12146
Query 4458 GACAACT--CTGTAC-GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATG 4514
| || || || ||||||||||| ||| | || || | ||| | | | |||
Sbjct 12145 ---AGCTGACTTAACTGATAAAAATAACTATATAATCCATTTTAAGCAGCTACAGTTATG 12089
Query 4515 TTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGA 4574
|||||| ||| | || | || |||||| | ||| || |||| | || ||
Sbjct 12088 TTTAGAGCAGGGTATGATTTTAAAAAAAATATCTCGAGTTTTATCATTTAATCAGTCCTG 12029
Query 4575 CTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTT 4634
||||| ||| | ||||| || ||||| | ||||| |||||| ||||| ||
Sbjct 12028 TTGGCTGAAACCTTATATTGAGCTCAATACATCTCTTAGAAAATTAGCTAGCAATGACTT 11969
Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694
|| | ||||||||| ||||||||| |||||| |||| || || || |||||||||||
Sbjct 11968 TGAGATAAACTTTTACAAATTAATGGTTAATGCCGTTTACGGCAAAACAATGGAGAATGT 11909
Query 4695 ACGAAAA 4701
| |||||
Sbjct 11908 A-GAAAA 11903
>seq4491
Length=15507
Score = 87.8 bits (96), Expect = 4e-13
Identities = 243/367 (66%), Gaps = 7/367 (2%)
Strand=Plus/Plus
Query 4338 TGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAA 4397
||| || || || | ||||||||| | | |||||||| || | ||| || || ||
Sbjct 2887 TGTTGGATATATTTTAGAAGTAGATTTGCGATATCCTGATGATATTCATAATAAGCATAA 2946
Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCAC 4457
| ||||||| ||||| ||| || | ||||| || | ||||| |||||| |
Sbjct 2947 TAGTTTACCTTTTTGCCCCGAAAATAAGATTCCACCAGGAGGAAAGCAGACAAAACTAAT 3006
Query 4458 GACA-ACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516
| ||| | |||||||| || ||| | || || | || | | | ||||
Sbjct 3007 AGCTGACT-TAAGTGATAAAAAGAACTATATAATCCATTTGAAGCAGCTACAGTTATGTA 3065
Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAA--ATTTGAGCAATCAGA 4574
|||| |||| | || | |||||| | | |||| || | |||| | || ||
Sbjct 3066 TAGAGCAAGGTATGATTTT--AGAAAAAATATCTAGAGTTTTATCATTTAATCAGTCCTG 3123
Query 4575 CTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTT 4634
||||| ||| | ||||| || ||||| | ||||| |||||| ||||| ||
Sbjct 3124 TTGGCTGAAACCTTATATTGACCTCAATACATCTCTTAGAAAATTAGCTAGCAATGACTT 3183
Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694
|| | ||||||||| ||||||||| |||||| |||| || || || |||||||||||
Sbjct 3184 TGAGATAAACTTTTACAAATTAATGGTTAATGCCGTTTACGGTAAAACAATGGAGAATGT 3243
Query 4695 ACGAAAA 4701
| |||||
Sbjct 3244 A-GAAAA 3249
>seq3503
Length=1351
Score = 80.6 bits (88), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672
||||| |||||| || || || || | ||||||||||||||||||| |||||| ||||
Sbjct 613 GAAAATTAGCTAGCAACGACTTTGAGATAAACTTTTATAAATTAATGGTTAATGCCGTTT 672
Query 4673 TTGGAAAGACGATGGAGAATGTACGAAAA 4701
|| || || |||||||||||| |||||
Sbjct 673 ACGGCAAAACAATGGAGAATGTA-GAAAA 700
>seq2437
Length=13124
Score = 80.6 bits (88), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672
||||| |||||| || || || || | ||||||||||||||||||| |||||| ||||
Sbjct 653 GAAAATTAGCTAGCAACGACTTTGAGATAAACTTTTATAAATTAATGGTTAATGCCGTTT 712
Query 4673 TTGGAAAGACGATGGAGAATGTACGAAAA 4701
|| || || |||||||||||| |||||
Sbjct 713 ACGGCAAAACAATGGAGAATGTA-GAAAA 740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97968827093660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |