Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq10 150 2e-31 seq7 84.2 2e-11 >seq10 Length=19787792 Score = 150 bits (166), Expect = 2e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 ||||| || ||||| |||| |||| ||||| ||||| || || ||||||| Sbjct 8707807 GATGACCTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGGGAGGGCAAGATGCACGGATTT 8707748 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || ||||||||||||||||| || || ||||||||||| || || ||||||||||| Sbjct 8707747 CTGCGCATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGCTG 8707688 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 ||||| | || || ||||| | ||||| || ||||| |||||||| || || ||| Sbjct 8707687 GAGTACGCGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCTAT 8707628 Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTG 71917 || || ||||||||| ||| | || | ||||||| ||| || ||| | Sbjct 8707627 GTGGGCTGCATGTGGTCTATTGGGGGCATACACGATATGGGCTGGAAGGAGCGTGCGATA 8707568 Query 71918 TTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 || || || |||||||| ||||| | | || ||| | ||||||||| | ||||| Sbjct 8707567 TTCGGAAAGATTCGCTACATGAACTATCAAGGATGCAAGCGCAAGTTCGACGTGAA 8707512 >seq7 Length=13333775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 115135 TTTTTACAAGAGAGTCCCGAGCATCTACTAAAGATCACGGGCTACATTTTGAACCTACCC 115194 ||||||||| ||| |||| || | || |||| ||| | | || ||| || Sbjct 10666136 TTTTTACAACAGACCAGCGAGGCTCCCGTGAAAGTCACCGGCGAGGTGCTGGGCCTTGCC 10666195 Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 || || |||||||||| ||||| ||||| ||||| |||| | ||||||||||| ||| Sbjct 10666196 AAGGGACTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCG 10666255 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCA 115300 | ||| || |||||||| ||||| || |||||||| |||| Sbjct 10666256 TCCGGCCCCCACTTTAACCCCCGGAACAAGGAGCACGGTGCCCCCA 10666301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633740088800