Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq4631 109 5e-19
seq12 96.9 3e-15
seq6 91.5 1e-13
seq3 89.7 4e-13
>seq4631
Length=7852
Score = 109 bits (120), Expect = 5e-19
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | |||||||| || |||| || || | || || | || ||||| |
Sbjct 489 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 548
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||||||| | |||||| ||||| ||||||||||| || ||||| ||||||
Sbjct 549 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 608
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTATA 24168
||| | |||| | || ||||||||| | ||||||| | ||| || ||| |||||||
Sbjct 609 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTC--TGATTATA 666
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||||| || || ||||| | ||||||||
Sbjct 667 ACATTCAGAAGGAGTCTACCTTGCATTTAGT 697
>seq12
Length=1235759
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
||||||||| | || || ||||| | ||||| || | || ||| | || |||||| ||
Sbjct 219165 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 219224
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||
Sbjct 219225 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 219284
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | ||||| | || ||||||||| || || |||| | | | | ||| ||
Sbjct 219285 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 219344
Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| || || || || || | || || |||
Sbjct 219345 AACATCCAGAAGGAGTCGACCCTGCACTTGGTG 219377
>seq6
Length=9197557
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045
|||||||||| | ||||| ||||| || ||||||||| | || ||| | || || |||
Sbjct 544366 ACAAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGC 544307
Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105
| ||||||||| ||| | || || ||||| ||||| || || || || || |
Sbjct 544306 CATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAG 544247
Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165
| || ||| | || || | || |||||||||||| || |||| | | | | || |
Sbjct 544246 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGACT 544187
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
| ||||| || || || || || | ||||| |||
Sbjct 544186 ACAACATCCAGAAGGAGTCGACTCTCCATTTGGTG 544152
>seq3
Length=12541198
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||||||||| | || || || || | ||||| || | || ||| |||| || ||| |
Sbjct 3173881 CAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 3173940
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| |||||||||||| | ||||| ||||| ||||| || ||||| || || ||
Sbjct 3173941 CTCGGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 3174000
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
||| ||| | |||| | || ||||||||| || || || | | | | | ||||||
Sbjct 3174001 TCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCTTGTCCGATTA 3174060
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| || || || || || | ||||| |||
Sbjct 3174061 CAACATCCAGAAGGAGTCCACCTTGCATTTGGTG 3174094
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3174341 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174400
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3174401 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174460
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | || ||||||||| || || || | | | | |||||| |||
Sbjct 3174461 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3174520
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || || || || | ||||| |||
Sbjct 3174521 ATCCAGAAGGAGTCCACCTTGCATTTGGTG 3174550
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3174569 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174628
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3174629 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174688
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | || ||||||||| || || || | | | | |||||| |||
Sbjct 3174689 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3174748
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || || || || | ||||| |||
Sbjct 3174749 ATCCAGAAGGAGTCCACCTTGCATTTGGTG 3174778
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3174113 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTCGAGCCCTCG 3174172
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3174173 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174232
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||| | |||| | || ||||||||| || || ||
Sbjct 3174233 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGA 3174267
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3174797 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174856
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3174857 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3174916
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||| | |||| | || ||||||||| || || ||
Sbjct 3174917 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGA 3174951
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3175025 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175084
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3175085 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175144
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||| | |||| | || ||||||||| || || ||
Sbjct 3175145 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGA 3175179
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3175253 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175312
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3175313 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175372
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | || ||||||||| || || || | | | | |||||| |||
Sbjct 3175373 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 3175432
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || || || || | ||||| |||
Sbjct 3175433 ATCCAGAAGGAGTCCACCTTGCATTTGGTG 3175462
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3175481 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175540
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3175541 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175600
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||| | |||| | || ||||||||| || || ||
Sbjct 3175601 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGA 3175635
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| |||| |||||| ||
Sbjct 3175709 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175768
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 3175769 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 3175828
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||| | |||| | || ||||||||| || || ||
Sbjct 3175829 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGA 3175863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429910901142450
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