Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 136 3e-27
seq9 107 1e-18
seq4392 98.7 7e-16
seq2193 98.7 7e-16
seq6 95.1 8e-15
>seq1058
Length=23677
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 9852 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 9911
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 9912 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9946
>seq9
Length=30819483
Score = 107 bits (118), Expect = 1e-18
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|| || || || || ||||| ||||| ||| || |||||| ||||| || | ||
Sbjct 25249728 AATGAACGGTTTATTGTTAATGGATCACATGACGTCAACAAGCTTCAGGATTTGTTGGAT 25249787
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
||||| ||||| |||||||| |||| | |||||||||||||| ||||| | || |
Sbjct 25249788 GGCTTCATTCGAAAGTTTGTTTTGTGCCCTGAATGCGATAACCCAGAGACTAATCTGACC 25249847
Query 6495 GTGTCTACCAAGAGAA--ACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCA 6552
|| || | |||| ||| | || ||||| ||| |||||| || ||||| | ||||||
Sbjct 25249848 GTATC-AGCAAG-GAACCAGACAATCTCGCAGTCCTGCAAGGCATGCGGCTTCCATGGTC 25249905
Query 6553 AGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
||| | | |||||| | ||||| ||||| |||| ||||| |||
Sbjct 25249906 TGCTTAAGGTGAACCACAAAGTGAACACATTCATTGTGAAAAATCCACCA 25249955
Score = 95.1 bits (104), Expect = 8e-15
Identities = 153/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
|||| ||| | ||||| || |||| |||| | || || || || || |||||||||
Sbjct 25248431 ATGGCCACCGTCAACGTTAACCGTAGTGTGACAGATATCTTTTATCGATATAAAATGCCG 25248490
Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279
|| ||| | || ||||| || || || || ||||| || || || || | || || |
Sbjct 25248491 CG--TCTTCAAGCAAAGGTAGAAGGAAAAGGCAACGGCATCAAGACTGTTTTGGTTAATA 25248548
Query 6280 TGCCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337
|| ||||||| || | |||| | || || || |||||||| ||||| || || || ||
Sbjct 25248549 TGGCTGAAGTTGC--ACGCGCTATTGGTCGTCCGGCCACCTATCCGACAAAGTACTTTGG 25248606
Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| || || |||||||| || | || ||||| ||
Sbjct 25248607 CTGTGAGCTGGGCGCTCAAACACTTTTCGATCATAA 25248642
>seq4392
Length=38752
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 6455 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 6396
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 6395 GGTTATATTTAG 6384
>seq2193
Length=45136
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 20241 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 20300
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 20301 GGTTATATTTAG 20312
>seq6
Length=9197557
Score = 95.1 bits (104), Expect = 8e-15
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || |
Sbjct 544133 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 544192
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || | || || | ||| || ||||| || || || || || || || | ||
Sbjct 544193 AAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 544252
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || |||||| |||| | || || || |
Sbjct 544253 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 544312
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
| || | || || ||||| || |||||||||||||| || |||||||| || ||
Sbjct 544313 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 544367
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||||| ||||||||| ||||| |||||| || || ||||| || || | | || |
Sbjct 542322 ACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 542381
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | || || || || || || || || || || || | ||||| || || ||
Sbjct 542382 ATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 542441
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|||| ||| || ||||| |||| | || || | ||| || || | |||||
Sbjct 542442 GTCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAAT 542501
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||| || |||| || |||||||| || |||||
Sbjct 542502 AGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || |
Sbjct 542537 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 542596
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || | || || | || || ||||| || || || || || || || | ||
Sbjct 542597 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGG 542656
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || |||||| |||| | || || || |
Sbjct 542657 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 542716
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || ||||| || |||||||||||||| || || |||||
Sbjct 542717 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 542765
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||||||| ||||| |||||| || || ||||| || |
Sbjct 542993 TACCACCGCGGAGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 543052
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || | || || | || |||||||| || || || || || || || | ||
Sbjct 543053 AAAGAGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 543112
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || |||||| |||| | || || || |
Sbjct 543113 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 543172
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || ||||| || |||||||||||||| || || |||||
Sbjct 543173 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543221
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || |
Sbjct 543677 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 543736
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || | || || | || || ||||| || || || || || || || | ||
Sbjct 543737 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGG 543796
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || |||||| |||| | || || || |
Sbjct 543797 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 543856
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || ||||| || |||||||||||||| || || |||||
Sbjct 543857 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334927646410490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |