Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1058 136 3e-27 seq9 107 1e-18 seq4392 98.7 7e-16 seq2193 98.7 7e-16 seq6 95.1 8e-15 >seq1058 Length=23677 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 9852 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 9911 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9912 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9946 >seq9 Length=30819483 Score = 107 bits (118), Expect = 1e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || || || ||||| ||||| ||| || |||||| ||||| || | || Sbjct 25249728 AATGAACGGTTTATTGTTAATGGATCACATGACGTCAACAAGCTTCAGGATTTGTTGGAT 25249787 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| ||||| |||||||| |||| | |||||||||||||| ||||| | || | Sbjct 25249788 GGCTTCATTCGAAAGTTTGTTTTGTGCCCTGAATGCGATAACCCAGAGACTAATCTGACC 25249847 Query 6495 GTGTCTACCAAGAGAA--ACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCA 6552 || || | |||| ||| | || ||||| ||| |||||| || ||||| | |||||| Sbjct 25249848 GTATC-AGCAAG-GAACCAGACAATCTCGCAGTCCTGCAAGGCATGCGGCTTCCATGGTC 25249905 Query 6553 AGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||| | | |||||| | ||||| ||||| |||| ||||| ||| Sbjct 25249906 TGCTTAAGGTGAACCACAAAGTGAACACATTCATTGTGAAAAATCCACCA 25249955 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || |||| |||| | || || || || || ||||||||| Sbjct 25248431 ATGGCCACCGTCAACGTTAACCGTAGTGTGACAGATATCTTTTATCGATATAAAATGCCG 25248490 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||| | || ||||| || || || || ||||| || || || || | || || | Sbjct 25248491 CG--TCTTCAAGCAAAGGTAGAAGGAAAAGGCAACGGCATCAAGACTGTTTTGGTTAATA 25248548 Query 6280 TGCCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 || ||||||| || | |||| | || || || |||||||| ||||| || || || || Sbjct 25248549 TGGCTGAAGTTGC--ACGCGCTATTGGTCGTCCGGCCACCTATCCGACAAAGTACTTTGG 25248606 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || |||||||| || | || ||||| || Sbjct 25248607 CTGTGAGCTGGGCGCTCAAACACTTTTCGATCATAA 25248642 >seq4392 Length=38752 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 6455 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 6396 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 6395 GGTTATATTTAG 6384 >seq2193 Length=45136 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 20241 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 20300 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 20301 GGTTATATTTAG 20312 >seq6 Length=9197557 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || | Sbjct 544133 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 544192 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||| || ||||| || || || || || || || | || Sbjct 544193 AAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 544252 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || || | Sbjct 544253 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 544312 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | || || ||||| || |||||||||||||| || |||||||| || || Sbjct 544313 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 544367 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| ||||||||| ||||| |||||| || || ||||| || || | | || | Sbjct 542322 ACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 542381 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || || || || || || || || || || | ||||| || || || Sbjct 542382 ATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 542441 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| ||| || ||||| |||| | || || | ||| || || | ||||| Sbjct 542442 GTCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAAT 542501 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || |||| || |||||||| || ||||| Sbjct 542502 AGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || | Sbjct 542537 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 542596 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || ||||| || || || || || || || | || Sbjct 542597 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGG 542656 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || || | Sbjct 542657 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 542716 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || |||||||||||||| || || ||||| Sbjct 542717 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 542765 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| ||||| |||||| || || ||||| || | Sbjct 542993 TACCACCGCGGAGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 543052 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || |||||||| || || || || || || || | || Sbjct 543053 AAAGAGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 543112 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || || | Sbjct 543113 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 543172 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || |||||||||||||| || || ||||| Sbjct 543173 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543221 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || | Sbjct 543677 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 543736 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || ||||| || || || || || || || | || Sbjct 543737 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGG 543796 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || || | Sbjct 543797 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 543856 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || |||||||||||||| || || ||||| Sbjct 543857 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334927646410490