Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 122 8e-23 seq4631 104 2e-17 >seq10 Length=19787792 Score = 122 bits (134), Expect = 8e-23 Identities = 207/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| ||||| ||||| || || |||||||| || | || | || || || Sbjct 8707514 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGC 8707573 Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 || || || | | | ||||| | || | ||| |||||||| || |||||||| Sbjct 8707574 ACGCTCCTTCCAGCCCATATCGTGTATGCCCCCAATAGACCACATGCAGCCCACATAGCC 8707633 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 || |||||||| || || | |||||| | ||||| || | || || || ||| || Sbjct 8707634 ATTGGGATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGTACTCCAGCGC 8707693 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 | || | | | |||||| || | ||||||||||||||||||||||||| | || Sbjct 8707694 CTGCTCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGCAGAAATCC 8707753 Query 51222 GTGCATCTTGCCCT--CGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||||||||| |||| | |||||| || || |||||||||| || |||| Sbjct 8707754 GTGCATCTTGCCCTCCCGCACC--AGCTGCAGCTGGGCAGAGTTCCACAGGTCATCGT 8707809 >seq4631 Length=7852 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || ||||||||||| | || || || |||| || | || || || | Sbjct 485 AACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACC 544 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||| || || ||||| |||| |||| || | || ||||||||||| ||||| | Sbjct 545 GTCGGATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCTC 600 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || |||||||| | || || || ||||| ||||| ||||||| || || || | Sbjct 601 CAGATCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTG 660 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||| || ||||| || || || || | |||||||| || |||| Sbjct 661 ATTATAACATTCAGAAGGAGTCTACCTTGCATTTAGTACTTCGGCT 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433302703123850