Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 122 8e-23
seq4631 104 2e-17
>seq10
Length=19787792
Score = 122 bits (134), Expect = 8e-23
Identities = 207/298 (69%), Gaps = 4/298 (1%)
Strand=Plus/Plus
Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041
||||| ||||| ||||| || || |||||||| || | || | || || ||
Sbjct 8707514 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGC 8707573
Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101
|| || || | | | ||||| | || | ||| |||||||| || ||||||||
Sbjct 8707574 ACGCTCCTTCCAGCCCATATCGTGTATGCCCCCAATAGACCACATGCAGCCCACATAGCC 8707633
Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161
|| |||||||| || || | |||||| | ||||| || | || || || ||| ||
Sbjct 8707634 ATTGGGATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGTACTCCAGCGC 8707693
Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221
| || | | | |||||| || | ||||||||||||||||||||||||| | ||
Sbjct 8707694 CTGCTCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGCAGAAATCC 8707753
Query 51222 GTGCATCTTGCCCT--CGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
|||||||||||||| |||| | |||||| || || |||||||||| || ||||
Sbjct 8707754 GTGCATCTTGCCCTCCCGCACC--AGCTGCAGCTGGGCAGAGTTCCACAGGTCATCGT 8707809
>seq4631
Length=7852
Score = 104 bits (114), Expect = 2e-17
Identities = 160/226 (71%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||| || ||||||||||| | || || || |||| || | || || || |
Sbjct 485 AACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACC 544
Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
||| || || ||||| |||| |||| || | || ||||||||||| ||||| |
Sbjct 545 GTCGGATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCTC 600
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| || |||||||| | || || || ||||| ||||| ||||||| || || || |
Sbjct 601 CAGATCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTG 660
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||| || ||||| || || || || | |||||||| || ||||
Sbjct 661 ATTATAACATTCAGAAGGAGTCTACCTTGCATTTAGTACTTCGGCT 706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433302703123850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |