Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 244 1e-59 seq9 116 4e-21 >seq10 Length=19787792 Score = 244 bits (270), Expect = 1e-59 Identities = 595/891 (67%), Gaps = 19/891 (2%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || || || ||||| || ||||| || || || | | ||||| ||| Sbjct 12207686 TAGAAATCGGCGTCAAGGGTAAACACGTTGTCCAGGCGACTCGTT---ACGACACC-CAT 12207741 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| || | || || || |||||||| ||||||||||| |||| || ||| Sbjct 12207742 GCGCTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCAT 12207801 Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTCGTA 92916 | || | ||| |||||||| | ||| || ||| | ||||| | | | Sbjct 12207802 CTCCATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAG 12207861 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || | ||| || || || || |||||||| ||||| | | |||| ||||| || | Sbjct 12207862 CAGC---CGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAAT 12207918 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | || || || || || || | ||| || | ||||||| | || || || | | Sbjct 12207919 CAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGAT 12207978 Query 93037 GATTTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| || || | | || | |||| | || || | || | ||||| | |||| Sbjct 12207979 GATCTCGATGATGCGCTCCCGCTTGG--GCCGCTGCACTAGATGGTGATACATGA-GCAC 12208035 Query 93095 -GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||||||| || | ||||||||| || || |||| ||| ||| ||| || | ||| Sbjct 12208036 CGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACC 12208095 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || || || ||||| |||||||| || || ||||| || ||| ||| || || Sbjct 12208096 GGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGAT 12208155 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 ||||||||||| ||||| || | |||||| |||||||| || || || || | || Sbjct 12208156 TCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATAT 12208215 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | ||||| || || || ||| | | || | || || ||||| || || Sbjct 12208216 CCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAA 12208275 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 | ||| || ||||| | || || |||||||| || || || | || ||||| || Sbjct 12208276 CAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTC 12208335 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || ||||||||||| || || ||||| |||||||| || | || || |||||||| Sbjct 12208336 GGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTG 12208395 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||| || ||| ||| | ||| || ||||| || || || || || || || || || || Sbjct 12208396 CACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAA 12208455 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 || |||| | ||| ||||| | ||| | || | || |||| || | Sbjct 12208456 GAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGT 12208515 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || ||||| ||||| || ||||| |||||||| || || || || || Sbjct 12208516 CGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGCCTCCGC 12208566 >seq9 Length=30819483 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 14114536 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 14114595 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 14114596 GTGGGTTCGAACCCCACACCTGACAA 14114621 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 14111786 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 14111845 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 14111846 TGGGTTCGAACCCCACATCTGACA 14111869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556827457959600