Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq10 244 1e-59
seq9 116 4e-21
>seq10
Length=19787792
Score = 244 bits (270), Expect = 1e-59
Identities = 595/891 (67%), Gaps = 19/891 (2%)
Strand=Plus/Plus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802
|||||||| || || || ||||| || ||||| || || || | | ||||| |||
Sbjct 12207686 TAGAAATCGGCGTCAAGGGTAAACACGTTGTCCAGGCGACTCGTT---ACGACACC-CAT 12207741
Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861
||||| || | || || || |||||||| ||||||||||| |||| || |||
Sbjct 12207742 GCGCTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCAT 12207801
Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTCGTA 92916
| || | ||| |||||||| | ||| || ||| | ||||| | | |
Sbjct 12207802 CTCCATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAG 12207861
Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
|| | ||| || || || || |||||||| ||||| | | |||| ||||| || |
Sbjct 12207862 CAGC---CGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAAT 12207918
Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036
| | || || || || || || | ||| || | ||||||| | || || || | |
Sbjct 12207919 CAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGAT 12207978
Query 93037 GATTTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094
||| || || | | || | |||| | || || | || | ||||| | ||||
Sbjct 12207979 GATCTCGATGATGCGCTCCCGCTTGG--GCCGCTGCACTAGATGGTGATACATGA-GCAC 12208035
Query 93095 -GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153
||||||||| || | ||||||||| || || |||| ||| ||| ||| || | |||
Sbjct 12208036 CGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACC 12208095
Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213
|| | || || || ||||| |||||||| || || ||||| || ||| ||| || ||
Sbjct 12208096 GGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGAT 12208155
Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273
||||||||||| ||||| || | |||||| |||||||| || || || || | ||
Sbjct 12208156 TCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATAT 12208215
Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333
||| | ||||| || || || ||| | | || | || || ||||| || ||
Sbjct 12208216 CCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAA 12208275
Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393
| ||| || ||||| | || || |||||||| || || || | || ||||| ||
Sbjct 12208276 CAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTC 12208335
Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453
|| || ||||||||||| || || ||||| |||||||| || | || || ||||||||
Sbjct 12208336 GGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTG 12208395
Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513
||| || ||| ||| | ||| || ||||| || || || || || || || || || ||
Sbjct 12208396 CACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAA 12208455
Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573
|| |||| | ||| ||||| | ||| | || | || |||| || |
Sbjct 12208456 GAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGT 12208515
Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| ||||| ||||| || ||||| |||||||| || || || || ||
Sbjct 12208516 CGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGCCTCCGC 12208566
>seq9
Length=30819483
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 14114536 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 14114595
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 14114596 GTGGGTTCGAACCCCACACCTGACAA 14114621
Score = 109 bits (120), Expect = 6e-19
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
||||||||||||||| |||||||||||||||||||||| |||||||| | | |||||
Sbjct 14111786 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 14111845
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||| ||||||
Sbjct 14111846 TGGGTTCGAACCCCACATCTGACA 14111869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556827457959600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |